UFO10212.5prime Sequence
1022 bp (875 high quality bases) assembled on 2011-11-10
> UFO10212.5prime
CAGTCGACATGGACCAGTCTAAACAGGTTTTGCGGGACTATTGCGGCGAC
GGCAATGGTACCTGTGCATCGTCCTTGAAGGAAATCACCTTAATTGAGAC
CGTGACCAGTTTCCTGGAGGAGAATGGCGCCGCCGAAATCGACAGAAGGG
TCCTGCGCAAACTAGCCGAGGCACTGTCCAAAAGCATAGACGACACCAGT
CCGGGAGCCCTGCAAGATGTCACCATGGAGAACTCATATGCCAGTTTTGA
CGTTCCACGACCTCCAGGCGGCGGCAACTCGCCCTTGCCGTCACAGGGTC
GCTCTGTACGCGAATTGGAGGAGCAGATGTCCGCGCTGCGCAAGGAGAAC
TTCAATCTAAAGCTGCGCATCTACTTCCTCGAGGAGGGTCAGCCGGGTGC
CCGGGCAGACAGCTCCACAGAATCCTTAAGCAAACAGCTCATCGATGCCA
AGATCGAAATCGCGACATTGAGAAAAACTGTCGATGTAAAGATGGAGCTG
CTCAAGGATGCCGCTCGAGCCATTTCTCATCACGAGGAATTGCAGCGCAA
AGCAGACATTGACAGCCAGGCAATAATCGACGAGTTGCAAGAGCAAATAC
ACGCCTATCAGATGGCGGAGTCTGGTGGTCAACCTGTCGAAAATATTGCC
AAAACCAGGAAAATGTTGCGCCTTGAATCGGAGGTGCAGAGATTGGAGGA
GGAACTGGTGAATATCGAAGCTCGTAACGTTGCAGCCCGGAACGAGCTGG
AATTCATGTTGGCCGAGCGCCTAGAATCCCTAACAGCCCTGTGAGGGCAA
GATTCAAGTGCCTGGCCATCAAGAATTTCCGAACTGGTAGAGCGTCTTGA
AAAGGAAACAGCATCCGCCGAGTCATCCCACGCCAATCGAGATTCTGGGC
GCCCACCTGGCGGATAAGATTGGCGAGCTGCAGAAGCCATGAAAAGCTTC
AGGAGCGGCGAGCGCCATTCCACCGAGCAGGCATGCCGGCACATTCCAAA
GCTATGCTAAGCCTAGCAGCCA
UFO10212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RA | 4322 | CG4832-RA | 117..1127 | 8..1022 | 4570 | 97.5 | Plus |
| cnn-RL | 5012 | CG4832-RL | 117..988 | 8..882 | 4270 | 99.4 | Plus |
| cnn-RK | 2006 | CG4832-RK | 117..988 | 8..882 | 4270 | 99.4 | Plus |
| cnn-RL | 5012 | CG4832-RL | 1678..1817 | 882..1022 | 305 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13444765..13445138 | 611..238 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 13444427..13444696 | 882..610 | 1185 | 98.2 | Minus |
| 2R | 25286936 | 2R | 13450174..13450359 | 193..8 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13445547..13445590 | 237..194 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:26 has no hits.
UFO10212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:05 Download gff for
UFO10212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 122..1123 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:01 Download gff for
UFO10212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 112..1113 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:12 Download gff for
UFO10212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 112..1113 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:12 Download gff for
UFO10212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13444428..13444694 | 612..881 | 98 | <- | Minus |
| 2R | 13444765..13445138 | 238..611 | 100 | <- | Minus |
| 2R | 13445547..13445590 | 194..237 | 100 | <- | Minus |
| 2R | 13450174..13450363 | 1..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:01 Download gff for
UFO10212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9331933..9332199 | 612..881 | 98 | <- | Minus |
| arm_2R | 9332270..9332643 | 238..611 | 100 | <- | Minus |
| arm_2R | 9333052..9333095 | 194..237 | 100 | <- | Minus |
| arm_2R | 9337679..9337868 | 1..193 | 97 | | Minus |
