UFO10216.5prime Sequence
1113 bp (986 high quality bases) assembled on 2011-11-10
> UFO10216.5prime
CAGTCGACATGACCACGCCTGTGCCCCGCCGCACCAAGGACATGATGGCA
CTGGGACTGGACTCCGACTCCGAGGACGACTTTAACACGCCATACCGACC
ACGACAAGCGGCGGCGGGAGAACGAAAACAGCAGCCGGTGGCGTCTTTCC
AAGTCCAAACGAGGGGCAAGGAGAACGAACCGCATCCCCTGCCCATAAAT
ATGCTACCTCGCCGAGTGTCCGAGTTGACTATGATGGATTCGGACAGTGA
CGAGGAGGACATCAAGAGCAATCACAACCTTAACTGCGCCATCCTAAACG
ATTCCTTTGTGCTGAGCCCATCCCAAGAGTTAACAAACAGCAACAGCAAC
ATAACCACTCGTAGAACACCAAGTGCCGCCCCCCTTAAGCAATCCGATTC
GAATCTCTCGTTCCTGGGAAGATTCAACGACATGGGCATCAATTGCAGCA
GTCAAGGATCCCCTGTTGCGAATTCGGAAAAACAGGTGGCCAAAAAGACA
GCACCCACGCTTCAAGCTGCACCAAGTGCCACCGAAAGGCGCCCACTCCA
AGAGACAGAGACGCCACTGCGTAATGAATTACCCTCCACCTCGAAGACGA
AGCCGGATGCAGACTTCATTACCCCCCAAGTACGAACAATTGGTTCCACA
CTGGCGGGAAAAAGTCGGAGTGCGGTGTCCAATGACTTCCGTGCGCAGAA
AGTGCTCTTCCAAACACCTATGACCGTGAGTCGTGCTGCTCCAGTGGCCT
CCGATAGCATAAGCTTCTCCCTGTGCGACACCATCACAGAAAGCCCGGAC
ATTCCGGAGCCTCCGAAAAAGGCAGAACCACCAAAGAGTCAGCATCCTTC
CAAAAAGTCCCTAGATCATGTTTTCCGGGAGTCGGACAGATAACGTGCCA
GACAAAGTGGATAATGTGGAACCAAACGGAGCTGGTATCGATTCCCGCAG
TTGCTGTACCTCCAGAGCAGCTTCCCACAAGACATCTATATTTTAAAATC
AAGATCATGAGTATACGATGATAAGAACTGGGCTTGGGGCGGCCTCCAGC
TCTTGTTTTTGGCACGCGCGAATCGGATTCCGCATGATCGCCTGGAGTGT
GGATCGCAGCCGA
UFO10216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ald-RB | 2141 | CG7643-RB | 101..1178 | 9..1082 | 5045 | 98.5 | Plus |
| ald-RA | 2113 | CG7643-RA | 101..1178 | 9..1082 | 5045 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17671850..17672668 | 206..1019 | 3785 | 99.1 | Plus |
| 3R | 32079331 | 3R | 17671371..17671567 | 9..205 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:53 has no hits.
UFO10216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:13 Download gff for
UFO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 74..1156 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:00 Download gff for
UFO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1183 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:56 Download gff for
UFO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1183 | 9..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:56 Download gff for
UFO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17671371..17671567 | 9..205 | 100 | -> | Plus |
| 3R | 17671850..17672735 | 206..1088 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:00 Download gff for
UFO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13497093..13497289 | 9..205 | 100 | -> | Plus |
| arm_3R | 13497572..13498457 | 206..1088 | 97 | | Plus |
