UFO10217.5prime Sequence
961 bp (871 high quality bases) assembled on 2011-11-10
> UFO10217.5prime
CAGTCGACATGGGTAGTATCTATGGGCTTCTGCCGCTGCTTCTGCTTTTG
TGTCGCCTCCACGACGGCGGATCAAAGTTCGTTAGTCCTACGCGACACAC
CGATCTCAGCAGCACCATTATCATTGTGGAGGACGCCAAAGCCTGTTTCC
GACGAGTCCTGGCCGGAAAACGGATAGCACCACACTTCGTGCGCCGCTCC
ATATCCTGCGAGCGGGTGGAGGAGTGCATGCGGGAGTGTGGTCGGGAGCG
GCGTTTCATGTGCGAAGGCTTCAACTATAGGCTGGATCCCTCGGGTCACG
GGCAAGGCGACTGCGAGCTGGTCGAGATGCCACTGGCCCAGATGGACCTG
TACTCCAGTCCGGATCGACGTGATGCCAATTTGCTGAGGCATCCCGACTA
CGATTACTACGAGAGGGACCGCAATGCGCCGAGCAGCTGTCGCCGCAGCG
CTTGCCAGGATTGTTCCAAGGGTCCGGTTAGCAGTCAGCCTGTTTACTTC
AAGCCGAGTGGGGGAGCAGGGGGATATGGCGACCGTGACCGGGATCGGGA
CAGAGACAGGGATCACTATCGTCCGCATAGCAACACGGCCGTGGACCATT
ATCGTGGTCCATCTGGTCCTCCGGGCTCCTCCTCTTACGAACACCGACCT
CCCTACTCCTCCGAGTTCCATGGATCGCACAGCTCATCCTCCTCGGCATC
CTCCTATGAATTCTCCTCGCATGGCTCGGGATCTAGCTCGGGTTCCAGTT
CCGGATACTTTGGTCACACCCACCAGTAGTATGCGCGACATCCTACGTGA
TCGCATGCTCTCGATATCGCCGAGACGACGTGGAACTTGCATAGTCGTAA
TAGTCGGTCGCGCAGCGACGTCACAATCGCCGACGTGCGTCCACTCGACA
GCTCGAATCAGAGTGCTCCGAGTGCTCACACGAAGCATCACAACTCTGAG
TATACAGAGGA
UFO10217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42326-RD | 3400 | CG42326-RD | 235..1038 | 9..804 | 3820 | 99 | Plus |
| CG42326-RE | 5244 | CG42326-RE | 2208..2882 | 138..804 | 3175 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8576758..8577389 | 771..140 | 3160 | 100 | Minus |
| 2R | 25286936 | 2R | 8578125..8578257 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:02 has no hits.
UFO10217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:14 Download gff for
UFO10217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 230..1010 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:05 Download gff for
UFO10217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 235..1015 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:59 Download gff for
UFO10217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42326-RD | 235..1015 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:59 Download gff for
UFO10217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8576740..8577387 | 142..787 | 99 | <- | Minus |
| 2R | 8578125..8578257 | 9..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:05 Download gff for
UFO10217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4464245..4464892 | 142..787 | 99 | <- | Minus |
| arm_2R | 4465630..4465762 | 9..141 | 100 | | Minus |
