UFO10218.5prime Sequence
1076 bp (973 high quality bases) assembled on 2011-11-10
> UFO10218.5prime
CAGTCGACATGAAGTCGACGCGGACTGCACTTGGAGTGGCCCTGCTCCTG
GCCCTGGTGTCTCAACTGGCGGCCCACAGCTCGGATGACTTGGTTTACGG
CTACGAGTGCCGCAGTGGCTACTGCCAGAAGGTAGAGCTCAGCGAGGAGA
ACTACGTCAAGGCCATCAGTCTGCCCGTGTGCCGGCTCTTCTGCGGCAGC
TCCATCGGCACCTTGTGGCCCAAACCGACGGGCACTGTGCGTCTGGACAC
GTTGATGCGCCAAGTGGACATCTCCTTCATTGATTTCAATTTCAATGGAA
TTGCCCGCCAGCAGAAGCTATGGCGAGCGGTTGAAGACCGTTTCATGAAC
ATGCTCGAAGCCCAGATTCCGGATCGCAAGGTTCTGGCACGAGGTGGCTA
CCGTATGTCTGTGAACATCAATACTCCGGATGAGCCGACACCGGCCAGAC
TCACCCTGGATACGGATGAGAGCTATACGCTGGACATTGATACGGATGCC
TCGGGTCATGTGCTGGCCAACATAACCGCGTCCAACTTCTTTGGAGCCCG
TCATGGCCTGGAGACACTAGCCCAGTTGATTGTCTACGATGACATCCGCC
GCGAGGTTCAGGTGACTGCCAATGCCACCATCAACGATGCTCCCGTGTAC
AAATGGCGTGGATTGCTCCTGGACACCTCCCGTAACTACTACTCTGTGAA
GTCCATCAAGAGGACGTTGGAGGGCATGGCCTTGGTCAAACTGAACACCT
TCCACTGGCACATCACGGACTCGCACAGCTTCCCATTGGAGGTGAAGAAG
CGTCCGGAGCTGCACAAGCTGGGAGCCTATTCCCAACGGCAGGTGTACAC
CCGTCGGGACGTGGCCGAGGTTGTGGAGTACGGCCGCGTGCGAGCATCCG
TGTTATGCCAGAGTTCGATGCCCCTGCCCATGGTGGGTGAGGCTGGCAGC
AACAAGAACATGACCGCCTGCTTCAATGCCAGCCATGAAGTCGTTCTGCG
TGGAGCAACCGTGTTGCCAACTCGATCCCACTGGTGAACCGAATGTACGA
GTGTGCTGGAGACACTTTACCGCCAC
UFO10218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo1-RF | 2113 | CG1318-RF | 147..1203 | 5..1061 | 5015 | 98.7 | Plus |
| Hexo1-RE | 2069 | CG1318-RE | 103..1159 | 5..1061 | 5015 | 98.7 | Plus |
| Hexo1-RD | 2211 | CG1318-RD | 245..1301 | 5..1061 | 5015 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4289246..4289880 | 86..720 | 3175 | 100 | Plus |
| 3L | 28110227 | 3L | 4289960..4290301 | 720..1061 | 1260 | 95.1 | Plus |
| 3L | 28110227 | 3L | 4289091..4289171 | 5..85 | 390 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12489611..12489708 | 766..669 | 220 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:10 has no hits.
UFO10218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:14 Download gff for
UFO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 240..1314 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:10 Download gff for
UFO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 241..1315 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:03 Download gff for
UFO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 241..1315 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:03 Download gff for
UFO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4289087..4289171 | 1..85 | 95 | -> | Plus |
| 3L | 4289961..4290300 | 721..1060 | 96 | -> | Plus |
| 3L | 4289246..4289880 | 86..720 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:10 Download gff for
UFO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4289087..4289171 | 1..85 | 95 | -> | Plus |
| arm_3L | 4289246..4289880 | 86..720 | 100 | -> | Plus |
| arm_3L | 4289961..4290300 | 721..1060 | 96 | -> | Plus |
