UFO10219.5prime Sequence
819 bp (740 high quality bases) assembled on 2011-11-10
> UFO10219.5prime
CAGTCGACATGGTGCATCTGTATCAACGACGTCGCAACCGCGAACAGGCT
GTGAAACAATTCATTGATCTCTGCAACAATCTAGGTGCTAACTGCAGCAC
GACGACAGCCACATCCCCGTCAACTTCCTCCTCCTCAGCCAGCAGCACGC
AGAACTTAATAGCAGTAGTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAA
TTACCGGCGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGG
TGGAGGTGGGGGAGCTGCGCCTGTGAGGCGCCACATCTCGCATACGACAG
CCGTGAAGTTTTTGTACGCCCGTAAATTTGATATACCACGAGCAGTCTCA
CTGTGCGATCAGCATGAACAGATCCGCCTGAAGGAGTATCTATATAACAT
CGATCCGGATGTGGAGCCCTTGCTCTCCTAGTTGCAGACCGGCAAGTTCA
CAATCCTGCCCGCACGCACTTCCAGTGGCGCTGCCATCGCCCTTTTCACC
GCCAATCGACACAGTCCGCTGAGCGTTTCGCACACAACCACGCTGCAGGG
CATCGTCTATCAGCTGGACAGTGCGCTCCAGGATTCGGAGACGCAGCGTG
CCGGGCTCGTTTTTATCTACGACATGAGCGGCTCAAGTATTCCAACTTCG
ACTACGACCCTCTCCCAGAATATTCTCACACTGCTTAGGCGGCTATCCAG
CGCGTCTGAAGAGGTCCTGATCCTGACGGCCCCACTGTGGTTCAAGGCAC
CCTTCAAGATCCTGCATCTGTTCGTGCGCAACAAGCTGCTCTAGCGAATG
TTCACTGTATCGGTGCCTC
UFO10219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RB | 2969 | CG32697-RB | 176..990 | 8..819 | 3770 | 97.8 | Plus |
| l(1)G0232-RA | 3046 | CG32697-RA | 291..1067 | 46..819 | 3580 | 97.7 | Plus |
| l(1)G0232-RG | 5668 | CG32697-RG | 487..1262 | 47..819 | 3575 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9643957..9644370 | 458..45 | 2010 | 99 | Minus |
| X | 23542271 | X | 9643659..9643888 | 687..458 | 1040 | 98.7 | Minus |
| X | 23542271 | X | 9630963..9631095 | 819..688 | 495 | 93.2 | Minus |
| X | 23542271 | X | 9645710..9645750 | 48..8 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:43 has no hits.
UFO10219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:15 Download gff for
UFO10219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 167..990 | 1..819 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:01 Download gff for
UFO10219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 167..990 | 1..819 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:02 Download gff for
UFO10219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 167..990 | 1..819 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:02 Download gff for
UFO10219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9643957..9644367 | 48..458 | 99 | <- | Minus |
| X | 9645711..9645755 | 1..47 | 93 | | Minus |
| X | 9630963..9631095 | 688..819 | 93 | <- | Minus |
| X | 9643657..9643887 | 459..687 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:01 Download gff for
UFO10219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9524996..9525128 | 688..819 | 93 | <- | Minus |
| arm_X | 9537690..9537920 | 459..687 | 97 | <- | Minus |
| arm_X | 9537990..9538400 | 48..458 | 99 | <- | Minus |
| arm_X | 9539744..9539788 | 1..47 | 93 | | Minus |
