UFO10220.5prime Sequence
1103 bp (962 high quality bases) assembled on 2011-11-10
> UFO10220.5prime
CAGTCGACATGAACGATCCCGGCGATATACCACTGACACACACAAGCACT
CCGGACAGCAGGCCGCCCTGCAGCATCATTTCCATCATACCCACCATAGG
GATGTCCTCATGTCGCGGAAGAGCCGAGGCATTCGCACGGAGTCTGTCCT
CCAAGCTGCGCACCTTGGGATCACAGACAACCGAGGAGGGCGAGGGCAAC
GCGGAGGATGAGCCGATCATAAATGGAACCAGCACGAACACGTGGGTCAA
CTCGCACGACTCGGAGCAGACGGTGACGGACCTGCAGCCACTGCGCCATG
AGTCCGACTCCTTCTTCGACTTCGACTGCGAGCTGGAGTCGCCGGGGAGT
CCTGTGGACGAGTGCGAGTACCTGCGCTTGATCGAAACTGCCTCGAATAC
GCCGCACAACTCTACGGCGGAGTCGGGCTATGCCTGCGCTTCAATGGCCA
GCAGCCATAGTAGCAGCAATGATGGTCCGTACTTTGATGCATCCGCTTCC
ACATCCACAGCTGCAGCTGCCCAGGATCAGACGCTGCCAGCCTCGGAACA
CAAAGAGTATGTAAATACCCTACAACTAAACGGAAAGCATGGACTGGCCA
ATGGAGTGCAGGAGGAGCAGCCAGCTTTCCAGGATGATGTGCAGGAGGAC
GAGGCCTTCTTGCAGGCACAGATCCTCAATGAGCTCCAGAAGCACAGCAA
CAGTTTGACGGAAGTGGAGCAGACAAAGCCCGAGGAGGGCAAGCTCACCA
ATGGGCATCTCGAGAAGTGGAGGAGCTGGAACTGAAGACGTCCTGAGGTA
GCTGGTACTACAAACAGAGCTCCAAAGTGATCGCCGCTCCACAAGAAGTG
AAGCCTTTGCTGATAGAAGCCAAGAGCAATCACCTAATGACAGAGTTCAC
AAAGAAAGCTCCAGGAAAGGTTCCAGAAGGGAACTCCATTCGAAGGAGTC
CAAGAGATCTCCTAGCGAAGAAGTCAGACGGACGCGTCGGATGAAAGGTC
AGAGAAATTTCCACGATACTGTCAAGCGCATCCACCACAAATTCCGCCAC
GAATTCAATCAACGAGTACCACGTGAAGATCCACCGAAGGAAGCAGAATG
ATG
UFO10220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-76A-RD | 5214 | CG9619-RD | 1310..2367 | 9..1050 | 4690 | 97.5 | Plus |
| Gbs-76A-RC | 4408 | CG9619-RC | 1068..2125 | 9..1050 | 4690 | 97.5 | Plus |
| Gbs-76A-RB | 3556 | CG9619-RB | 216..1273 | 9..1050 | 4690 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19284270..19285103 | 998..174 | 3560 | 97.4 | Minus |
| 3L | 28110227 | 3L | 19285224..19285391 | 176..9 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:51 has no hits.
UFO10220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:16 Download gff for
UFO10220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9619-RA | 192..1225 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:06 Download gff for
UFO10220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-76A-RA | 192..1225 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:07 Download gff for
UFO10220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-76A-RB | 207..1240 | 1..1019 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:07 Download gff for
UFO10220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19284270..19285100 | 177..998 | 98 | <- | Minus |
| 3L | 19285224..19285396 | 1..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:06 Download gff for
UFO10220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19277370..19278200 | 177..998 | 98 | <- | Minus |
| arm_3L | 19278324..19278496 | 1..176 | 97 | | Minus |
