UFO10221.5prime Sequence
1115 bp (970 high quality bases) assembled on 2011-11-10
> UFO10221.5prime
CAGTCGACATGGTGCGCAAGTCCGGTAGAGTTAAGATTTCTAGTCGCGAT
CGCGTTGCCGTTGGCAACATTCTGCTGCGTGGCAAAGTGGGCGGTGGGCG
GGTGGCAGTTGCAGCGGCAGAGGAGGCAGAGGCGGGGCGACGTCGACGCA
GGCGCGACAGCAGCGCCAGCCGAACTGCATCCAGTGACGAATCGGAGAGC
CACATAATGCACGCGGATGCCCTGGCCTCTGCCTATCCGGCTGCCTCGCA
GCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCCAATGGCGGTGGGCTGG
GACTGAGCAACAGTAGCAACCAGAGCAGCGAGAACTTTGCGCTCTGCAAC
GGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAAGTGCCAGCAGTGGCAG
CAACAACAACAACAGCATGTTCTCACCCAACAACAACTTGAGCGGAAGCG
GAAGTGGGACTAACAGCAGTCAGCAGCAATTGCAGCAGCAACAACAACAG
CAATCACCGACGGTCTGCGCCATTTGTGGAGATCGGGCGACGGGCAAACA
TTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGATTCTTCAGGAGGAGTG
TCAGGAAAAATCATCAGTACACTTGCAGATTTGCGCGAAACTGCGTTGTG
GACAAGGACAAACGGAATCAGTGCCGCTACTGCCGGCTGAGGAAGTGCTT
CAAGGCGGGCATGAAGAAAGAGGCGGTGCAAAACGAGCGGGATCGCATTA
GCTGCCGCCGCACCTCCAATGACGACCCGGATCCGGGCAATGGGCTGTCT
GTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGCGTCAGTCGAAGGCAGG
CGCTGCCATGGAGCCAAACATTAACGAGGACCTCTCCCACATGCAGTTCC
GCGAGCATCAACGATGTCTGCAAGTCGATGAAGCAGCAGCTGCTGACCCT
GGTGGAAATGGGCTAAGCAGATTCCGGCCTTAACGAGCTGCAGCTGAATG
ACAAGTGCACTGCTAACGCGCCAATGCCTGGCGAGCATTTGCTCTCGGGC
CTGTTCTCCGTCGTCGATGCACTGAAGATGTTCTCCCTGGCTGACAACAA
TGTGTGAAACCAAAG
UFO10221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RB | 2739 | CG9310-RB | 16..1114 | 9..1107 | 4985 | 97.7 | Plus |
| Hnf4-RE | 3876 | CG9310-RE | 1305..2224 | 188..1107 | 4090 | 97.3 | Plus |
| Hnf4-RA | 3307 | CG9310-RA | 736..1655 | 188..1107 | 4090 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8689814..8690253 | 628..189 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 8689201..8689629 | 1054..625 | 1685 | 95.8 | Minus |
| 2L | 23513712 | 2L | 8691014..8691194 | 189..9 | 905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 344..509 | 232 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 374..503 | 224 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 378..509 | 220 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 389..502 | 215 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 306..498 | 204 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 306..511 | 202 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 344..501 | 197 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 306..502 | 185 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 397..513 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 306..444 | 162 | 62.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 374..512 | 159 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 306..501 | 154 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 344..437 | 139 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 387..497 | 136 | 59.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 339..422 | 112 | 65.9 | Plus |
UFO10221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:16 Download gff for
UFO10221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 13..1103 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:12 Download gff for
UFO10221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 9..1099 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:11 Download gff for
UFO10221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 9..1099 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:11 Download gff for
UFO10221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8689162..8689625 | 629..1094 | 95 | <- | Minus |
| 2L | 8689814..8690252 | 190..628 | 100 | <- | Minus |
| 2L | 8691014..8691201 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:12 Download gff for
UFO10221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8691014..8691201 | 1..189 | 97 | | Minus |
| arm_2L | 8689162..8689625 | 629..1094 | 95 | <- | Minus |
| arm_2L | 8689814..8690252 | 190..628 | 100 | <- | Minus |
