UFO10222.5prime Sequence
1131 bp (884 high quality bases) assembled on 2011-11-10
> UFO10222.5prime
CAGTCGACATGGCCGCCACTACCACAACAACAACCACAACACTAGCAACA
ACCACCGGCAATAGCAGCTCCACAAACAACAGCAGCAGCAACAACAACAA
CAGCATCGCCAGCAGTCACAACAACAACAACAACATTGTTACCGTACACA
CCGTACTGAACAACCCACCCACCAATACTGCAGGCGGTGGTGTTGCCGAC
GCCGCCACCGTTGCCATTGCCAAGGACATGTTGCAGCTGCATCATGGCGC
AGCAGCAGCAGCAACAGCGGCGCTGAATAACTACAACAATAGCAGCAACA
ATAACAACAACAGCGCCGATCAGCTGACCGGCAACAGCAACAATTCAGCA
AACCACCCACCTGCCACCAGTAGCACCACCAACTCCTCCTCATCCTCCAC
CACCTCCGCCAACACCAACAACCCCTCTGCCAATGCGGCATCGACATTAA
CATCATCTTCCCCGCCATATGGAGAACTACGCTTCAATCAGGAGGTACTG
CCCATCACGGATGCCGTGACAGTAATCGGACGCAACTCGTCCACGTCGCT
GGTTCACTTCAACGTTGCCGAGAACAACCTTGTGTCGCGCAAACACTTTC
AGGTGCTCTACGATGTGGAGCTGCGAGCCTTCTTTGTCCAGTGCCTAAGC
AAAGAATGGCATCTTTGTGGATGATTTCCTGCAGCGCCGCAATGTGGATC
CACTTCGTTTGCCGCAGCGCTGCTACTTCCGCTTCCCGAGCACGGAGATT
CGTATCGAGTTCGAGAGCTATGTGCCCGCCACTTCATCGGATGCAATTGA
CGGTCATTCCCCATCCTTAGTCGTTGGTGGTGGGGGGTGGAGTAGCTGGG
GGGTGGAGCGCACGTTATTATTACCGCCGCCTACCGCAGGGGCGAACTTC
CACCAGCAGCAAATTGCATCCACCACCATGTAACAGCCGCAATTCTGCAG
CAAACAGCAGCATCCACACAAACCCGCCAGCGAAACACCTTGCCGTTTGA
AGCAGCAGCAGCAGCAACAAACAAAGGGGGGCACCACCCTGCTCCCGGGA
AAACCAAACCACCGCTTCACACAAACAAGAAATGGCAACAGGAGTAAAAA
GGTTAATGGACAGGATTCCGTGTGTTGGCCC
UFO10222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd68A-RP | 3278 | CG11799-RP | 226..1261 | 9..1063 | 4510 | 96.3 | Plus |
| fd68A-RO | 3379 | CG11799-RO | 226..1261 | 9..1063 | 4510 | 96.3 | Plus |
| fd68A-RN | 3382 | CG11799-RN | 226..1261 | 9..1063 | 4510 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11117305..11118014 | 719..9 | 3505 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11117017..11117170 | 874..719 | 620 | 96.2 | Minus |
Blast to na_te.dros performed 2014-11-27 00:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2505 | 249..457 | 275 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6941 | 250..442 | 262 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6945 | 233..395 | 229 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2529 | 250..457 | 218 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6896 | 279..457 | 210 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6946 | 251..490 | 200 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1593 | 279..355 | 145 | 70.5 | Plus |
UFO10222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:10 Download gff for
UFO10222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RI | 98..1106 | 1..1027 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:39 Download gff for
UFO10222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RN | 212..1220 | 1..1027 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:42 Download gff for
UFO10222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RN | 220..1228 | 1..1027 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:42 Download gff for
UFO10222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11117305..11118020 | 1..719 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:39 Download gff for
UFO10222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11110405..11111120 | 1..719 | 99 | | Minus |
