UFO10223.5prime Sequence
962 bp (815 high quality bases) assembled on 2011-11-10
> UFO10223.5prime
CAGTCGACATGTTCGCCCCCCGAAACTCGTCGCCAGTTGCCATTTACGGC
AAGGAGGATGTGGCAGCCTACGAGATAAAACTCAAAAAGGTCCTGGGCCT
CACCGTGTGCAGCAATGCGGCTCTGGATGTGTCCCCAGTCAGCGGCCTGC
TGGCCTATCCAGCTGGCTGCACCGTGGTGCTCTTCAACGCAAAACGCCAG
ACACAGGCCTACCTGGTCAACACCTCCCGCAAAGCATTCACATCCGTGGC
GTTCTCCCGGTGTGGTCGCTACGTGGCCACCGGGGAGTGTGGCATCAATC
CGGCCATCAAGGTCTGGGAGCTGGAGACTCCGAACGGAAGTCTGGAGCAC
TGCAGCGGCGGCAGTGTTGTTGCAGAGTTTGTGGACCACAAATACGCCGT
CACTTGTGTGGCCTTTTCGCCCACTGGCAAGTACCTGGTTTCGGTGGGCT
CCCAGCACGACATGATTGTGAATGTGTTCGACTGGCGGGCCAACCTCAAG
ATGGCCTCGAATAAAATCAGCTCCAAGGTGGCTGCCGTGTGCTTTTCCGA
GGATGGCAGCTATTTTGTGACCGTGGGTAATCGCCACGTGAAATACTGGT
ATCTAGAGGGTGGCAGAAAGTAAAAGGATCCTATTCCCCTGATGGGTCGC
AGCGCCATTCTGGGCGATTTGCGGGACACGACTTTTGTGCGGTGGCGTGC
GGCAAGGGGATCTGTGCGGAGAGCACGTACGCCATCACGCGGCAAGGACA
CTTGGTGGAGTTCAGCTCCCGCCGCTGCTCGACAGTGGGTGCAGTGCCGC
ACACATGCACTGTATCTGCTGATGAGAGTCATCTCGTGGGTGTGCGAGTC
ATCATCGCATCTCATCGCAGCTGATACTGACATCTGCTAGACCATACTGC
TGATGGCAGCATCGATCACAATCATCGGCAGCAGCAGTCGATCCATGCAT
GGTCCGACCGTC
UFO10223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RC | 8783 | CG7337-RC | 757..1628 | 8..862 | 3950 | 97.9 | Plus |
| CG7337-RB | 6246 | CG7337-RB | 757..1628 | 8..862 | 3950 | 97.9 | Plus |
| CG7337-RH | 5953 | CG7337-RH | 1104..1909 | 74..862 | 3620 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1933805..1934050 | 166..411 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 1934118..1934328 | 410..620 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 1934477..1934663 | 619..802 | 770 | 97.9 | Plus |
| 2L | 23513712 | 2L | 1932054..1932147 | 73..166 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 1928509..1928580 | 8..79 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:34 has no hits.
UFO10223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:11 Download gff for
UFO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RC | 95..918 | 1..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:49 Download gff for
UFO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RB | 753..1576 | 1..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:48 Download gff for
UFO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RB | 753..1576 | 1..819 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:48 Download gff for
UFO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1933806..1934049 | 167..410 | 100 | -> | Plus |
| 2L | 1934119..1934328 | 411..620 | 100 | -> | Plus |
| 2L | 1934479..1934663 | 621..802 | 97 | == | Plus |
| 2L | 1928505..1928575 | 1..74 | 94 | -> | Plus |
| 2L | 1932056..1932147 | 75..166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:49 Download gff for
UFO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1934479..1934663 | 621..802 | 97 | == | Plus |
| arm_2L | 1928505..1928575 | 1..74 | 94 | -> | Plus |
| arm_2L | 1932056..1932147 | 75..166 | 100 | -> | Plus |
| arm_2L | 1933806..1934049 | 167..410 | 100 | -> | Plus |
| arm_2L | 1934119..1934328 | 411..620 | 100 | -> | Plus |
