UFO10225.5prime Sequence
1074 bp (944 high quality bases) assembled on 2011-11-10
> UFO10225.5prime
CAGTCGACATGTATTATCCGCACATGGTGCAGGCGGGCGTAGCGCCTTTT
CCGGGCGCTCCGGCCGGCTATGCCGCCGCACCGAATCCTGGAGCAGCGGT
TGTTGCCGCAGCGGCCGCCGCCCAACAACAGCAGCAGCAGCAGCAGCAAC
AACAACAGCAGCAGCAGCAGGCCCAGCAGCAACAGCAACAACAGGTGGCC
GGAGGACCACCCAGCGCCGCGGACAGTTTGTCCATGGCGGTGGCAGCGGC
AGCGGCCAAACAGTCTGCTGATCCAGTGACCCAAATGAAATCGGGCAGCG
AGGCCGCAGGATCTGGCAACAGCAATAACAACAACACAGCTGGTGCGGGA
ACAGGAGCGCCAGGCGCAGCCGGAGGATTGACCACAGAATATTCAAGTGG
CGGCTGTGGGGGCGGTGGTGCATCAACGGCCAATTCGGTGGTGGTGGCCA
CCAGTGTTTCCGACGTTGTCAATGCCTCGCTGTACATGCAACAGAAGTCC
ACAGTATTGATCGCCAATGAGGCAGCAGAATCACAACAGAGCTCCGCCAT
GCAAAATGCCGGCGGCGGTGGAAATACTGGCGGCGGCGGCGGCGGAGGAG
GCGGCGGCACTCCCAGTTCTCCGCTCAGCAACTCCCCGTCCAGCGCAACA
GCCTCGCAGGCGGGCGGATGCGGACTGACCCTCAATGGCAGCGCCACCGA
GGGCAGCATGTCCGGTGATACATCGCCGGTGGCCAGTGGTGAACCGCTCC
TGCAGACGCCGCCCGCCCACCAACAGCAGCAACAGCAACAACAGCCGCTC
CTGTGCAGCAGTCCCACGTCGATGCAATCGTCGGGGCACCTCCGTGACGG
GCAGTTCGATAGCTTCCGGCACATTGGCGGCCACCAGCAGCAGTGCGTTC
GGACTTTTGCCCACCACCGGATTGGACAGCATTGCCTATTGGTGGTGCAC
AAACAGTCTGGTGCCGTTGTTGCTGCCAGACATCGCAGGTGATCGCCCAC
CTGAATGCAGCTGCCGCTGCAGCAGCGCCATCAGGTCGCCCAGGCCAATG
TGCCACTAGTCTCACAGCGCCCTA
UFO10225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| A2bp1-RF | 3413 | CG32062-RF | 494..1561 | 9..1074 | 4960 | 98.1 | Plus |
| A2bp1-RE | 3508 | CG32062-RE | 509..1576 | 9..1074 | 4960 | 98.1 | Plus |
| A2bp1-RL | 3944 | CG32062-RL | 1028..2084 | 20..1074 | 4905 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10568128..10568605 | 20..497 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 10573448..10574028 | 496..1074 | 2310 | 96.2 | Plus |
Blast to na_te.dros performed 2014-11-27 20:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2363 | 767..811 | 146 | 82.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6571..6624 | 744..798 | 137 | 74.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8027..8080 | 744..798 | 137 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6934 | 742..829 | 134 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 742..811 | 134 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6870 | 742..816 | 134 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2867 | 771..827 | 129 | 74.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6761 | 768..798 | 128 | 90.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6782 | 768..798 | 128 | 90.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2417 | 742..811 | 125 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1584 | 742..798 | 123 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2655 | 742..798 | 123 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1101 | 767..810 | 123 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6836 | 768..798 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6838 | 742..811 | 116 | 67.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1028 | 768..816 | 116 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 767..798 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2415 | 742..798 | 114 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1080..1139 | 742..798 | 112 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2666 | 750..791 | 111 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 742..794 | 111 | 69.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..999 | 767..795 | 109 | 86.2 | Plus |
UFO10225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:19 Download gff for
UFO10225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RF | 488..1560 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:28 Download gff for
UFO10225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RE | 503..1575 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:26 Download gff for
UFO10225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A2bp1-RE | 503..1575 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:26 Download gff for
UFO10225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10568129..10568605 | 21..497 | 100 | -> | Plus |
| 3L | 10573450..10574027 | 498..1073 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:28 Download gff for
UFO10225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10561229..10561705 | 21..497 | 100 | -> | Plus |
| arm_3L | 10566550..10567127 | 498..1073 | 96 | | Plus |
