Clone UFO10227 Report

Search the DGRC for UFO10227

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:102
Well:27
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG40178-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10227.5prime Sequence

1080 bp (985 high quality bases) assembled on 2011-11-10

> UFO10227.5prime
CAGTCGACATGATTTCATGCTTAATTAGTAATTATATTATAACCATTCTG
GTCCTGTGTACAACATCCTATATACACGTTTGTTCGTCGTTAAATGACCC
ATACGCTATATTGGGAATAAACAAAAAGGCAACTACATACGAAATAAGAG
AAGCTTACAAGGAATTAGCTAAGAAATGGCATCCTGATAAAGTTAAAAAT
GATTACGGTGCCGAAAAGTTCATACAAATTAAACTAGCTTATGAAATTCT
AGCTGACTTGGATCGACGACGAATTTTTGACCGGTATGGAGTATCGGATA
TTAACTCACAGTATTTTCAGAAGAAACATGATTATAGTGAATATAATCGC
TTTACATTAAATCAGAATGATGATGATTTTGGACAACGATTCGATATAAA
ACAAGACATTGCATTTTATCAGAAGTTATCAATAACAGAAAATTACTTTG
AGAAAATGATTTTATCAAAAAATGCAAAAAAAGTGCACGTCGTCATGTTT
TACAATGATTGGTGTTTTAAATGTACTCGAATTGTTGATGCCTTCAAAAA
GATTCTTGAACTACTTCAGCCAATAGGTATTAACTTTGCAACGGTTAATG
CAGTGCATGAAGAGTCCGTTTTTCGAAAATGTGGCGCCAGAGAAGTGCCA
CAACTGGTTTTGATTTTAGACAATCAGTATTTCTTATATCGCGATCATAG
CTTTACCCCACAAAAAGTTGTTGAATTTATACGCAAAAAAATACCATTTA
ATGTTTTCAAACGCATCGAACATGACAATTTCAATGATTTTCTGGGAGGA
TGGAGTGACAACAGAGCAAGGGCTTTAATTTTTGAGCCTCGAAGTTTAAC
TAGGTTACGATACCTTCTAACCGCCTTTGAATTTTACGACCGAGTTGCAT
TTGGATTTGTGAATACGACTAGTAGATCAAGCAATATATAACTCGTTTAA
GTCATACAGCCTAGAATACACTTATTTTATTTAATGAGGATACGACGACT
TTACAGCAGTGTTTGTATGGAAGAAATCCAAATCAATCTGCTGAATATGT
ATCTACTATCAGTCTGGCATCTGAATATCT

UFO10227.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG40178-RC 2984 CG40178-RC 559..1621 9..1058 4925 98.4 Plus
CG40178-RA 2558 CG40178-RA 133..1195 9..1058 4925 98.4 Plus
CG40178-RB 2619 CG40178-RB 194..1256 9..1058 4925 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25969225..25969628 581..178 2020 100 Minus
3L 28110227 3L 26165233..26165635 178..581 1955 99.5 Plus
3L 28110227 3L 25961360..25961541 904..723 910 100 Minus
3L 28110227 3L 25977966..25978136 179..9 855 100 Minus
3L 28110227 3L 26178612..26178792 723..904 845 98.9 Plus
3L 28110227 3L 26169489..26169661 9..181 760 96 Plus
3L 28110227 3L 25969034..25969182 723..575 745 100 Minus
3L 28110227 3L 26219982..26220153 9..179 705 95.3 Plus
3L 28110227 3L 26165678..26165826 575..723 700 98 Plus
3L 28110227 3L 26213849..26214020 9..179 690 94.8 Plus
3L 28110227 3L 25933277..25933342 1029..966 230 97 Minus
Blast to na_te.dros performed on 2014-11-27 20:12:55 has no hits.

UFO10227.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:20 Download gff for UFO10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RA 133..1199 9..1061 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:37 Download gff for UFO10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..1260 9..1061 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:35 Download gff for UFO10227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..1260 9..1061 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:35 Download gff for UFO10227.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 25961360..25961540 724..904 100 <- Minus
3L 25969034..25969180 577..723 100 <- Minus
3L 25969230..25969627 179..576 100 <- Minus
3L 25977967..25978136 9..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:37 Download gff for UFO10227.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1344059..1344239 724..904 100 <- Minus
3LHet 1351733..1351879 577..723 100 <- Minus
3LHet 1351929..1352326 179..576 100 <- Minus
3LHet 1360666..1360835 9..178 100   Minus