UFO10227.5prime Sequence
1080 bp (985 high quality bases) assembled on 2011-11-10
> UFO10227.5prime
CAGTCGACATGATTTCATGCTTAATTAGTAATTATATTATAACCATTCTG
GTCCTGTGTACAACATCCTATATACACGTTTGTTCGTCGTTAAATGACCC
ATACGCTATATTGGGAATAAACAAAAAGGCAACTACATACGAAATAAGAG
AAGCTTACAAGGAATTAGCTAAGAAATGGCATCCTGATAAAGTTAAAAAT
GATTACGGTGCCGAAAAGTTCATACAAATTAAACTAGCTTATGAAATTCT
AGCTGACTTGGATCGACGACGAATTTTTGACCGGTATGGAGTATCGGATA
TTAACTCACAGTATTTTCAGAAGAAACATGATTATAGTGAATATAATCGC
TTTACATTAAATCAGAATGATGATGATTTTGGACAACGATTCGATATAAA
ACAAGACATTGCATTTTATCAGAAGTTATCAATAACAGAAAATTACTTTG
AGAAAATGATTTTATCAAAAAATGCAAAAAAAGTGCACGTCGTCATGTTT
TACAATGATTGGTGTTTTAAATGTACTCGAATTGTTGATGCCTTCAAAAA
GATTCTTGAACTACTTCAGCCAATAGGTATTAACTTTGCAACGGTTAATG
CAGTGCATGAAGAGTCCGTTTTTCGAAAATGTGGCGCCAGAGAAGTGCCA
CAACTGGTTTTGATTTTAGACAATCAGTATTTCTTATATCGCGATCATAG
CTTTACCCCACAAAAAGTTGTTGAATTTATACGCAAAAAAATACCATTTA
ATGTTTTCAAACGCATCGAACATGACAATTTCAATGATTTTCTGGGAGGA
TGGAGTGACAACAGAGCAAGGGCTTTAATTTTTGAGCCTCGAAGTTTAAC
TAGGTTACGATACCTTCTAACCGCCTTTGAATTTTACGACCGAGTTGCAT
TTGGATTTGTGAATACGACTAGTAGATCAAGCAATATATAACTCGTTTAA
GTCATACAGCCTAGAATACACTTATTTTATTTAATGAGGATACGACGACT
TTACAGCAGTGTTTGTATGGAAGAAATCCAAATCAATCTGCTGAATATGT
ATCTACTATCAGTCTGGCATCTGAATATCT
UFO10227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40178-RC | 2984 | CG40178-RC | 559..1621 | 9..1058 | 4925 | 98.4 | Plus |
CG40178-RA | 2558 | CG40178-RA | 133..1195 | 9..1058 | 4925 | 98.4 | Plus |
CG40178-RB | 2619 | CG40178-RB | 194..1256 | 9..1058 | 4925 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25969225..25969628 | 581..178 | 2020 | 100 | Minus |
3L | 28110227 | 3L | 26165233..26165635 | 178..581 | 1955 | 99.5 | Plus |
3L | 28110227 | 3L | 25961360..25961541 | 904..723 | 910 | 100 | Minus |
3L | 28110227 | 3L | 25977966..25978136 | 179..9 | 855 | 100 | Minus |
3L | 28110227 | 3L | 26178612..26178792 | 723..904 | 845 | 98.9 | Plus |
3L | 28110227 | 3L | 26169489..26169661 | 9..181 | 760 | 96 | Plus |
3L | 28110227 | 3L | 25969034..25969182 | 723..575 | 745 | 100 | Minus |
3L | 28110227 | 3L | 26219982..26220153 | 9..179 | 705 | 95.3 | Plus |
3L | 28110227 | 3L | 26165678..26165826 | 575..723 | 700 | 98 | Plus |
3L | 28110227 | 3L | 26213849..26214020 | 9..179 | 690 | 94.8 | Plus |
3L | 28110227 | 3L | 25933277..25933342 | 1029..966 | 230 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:55 has no hits.
UFO10227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:20 Download gff for
UFO10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RA | 133..1199 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:37 Download gff for
UFO10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RB | 194..1260 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:35 Download gff for
UFO10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RB | 194..1260 | 9..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:35 Download gff for
UFO10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25961360..25961540 | 724..904 | 100 | <- | Minus |
3L | 25969034..25969180 | 577..723 | 100 | <- | Minus |
3L | 25969230..25969627 | 179..576 | 100 | <- | Minus |
3L | 25977967..25978136 | 9..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:37 Download gff for
UFO10227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1344059..1344239 | 724..904 | 100 | <- | Minus |
3LHet | 1351733..1351879 | 577..723 | 100 | <- | Minus |
3LHet | 1351929..1352326 | 179..576 | 100 | <- | Minus |
3LHet | 1360666..1360835 | 9..178 | 100 | | Minus |