UFO10228.5prime Sequence
1076 bp (983 high quality bases) assembled on 2011-11-10
> UFO10228.5prime
CAGTCGACATGAAGGAGAACAACAAGATCCTCCAACTCATCTATGTGGCG
TGGCGCGAGCGCTGGACGGACTCCCAGTGGGGCATCAACATAAAAAAGGT
GCTGCCGAGAGGAGTCAGTGGAGATGTATACAATCTGGCTGACTGTCTGA
TGCAGCAGGCACTCATTGGTTCCACGGCTAATCCGTTGGTTCTTAACTAC
CTGAAGCATTCACTGTGCGCCCATCTCGTTTCTCACGCTGCTGTTATTCG
GTGCATTGCCAAATATGACAAATTAGAGCGCGTTTATTGCATTACAGCGC
TCCTTGAATTCCTGGCCAGCATCGTGGATGGCGTTACCTGCCGAATAAAA
TCTGAGGAAGCGGTTTTACCGAGTTCCGTCGTCCACTTGGTGTACTGGCT
GCTTCAAATCTTCGCCAGAACTGTGCAGCACTATGAACTGTATGGTGAGA
TTAGTGCTGAGCAATCATACATGCTGGACCAGACCTGCGTGGTGATAGAT
CGGCTTAGCCAGCAGCAGTTCCTGCTGTCTATGCTGTACGTGGGCTGTCA
CGAAGAGCTCGAAATATGTGGACGGATTCGGGATAAGTACGCTACCATCA
AGGGATCGTTGACGAACTCAAACTTTACGCTAAATGCACCACAAGTGGAG
CAGCAATTGCAGCAGTTGGCCTTTATAGAAGCCAAGCATCTTGAAATGCA
ACCACTTAATCCGCCGTCAACACTCGAGAAGATCTCGTGCTGCGTGCAAC
CCTTACTGGCGGTGGAAGTGCTTCTCAATCCGTGCAAGGACACCGCTACT
ACGTGGCTGAGTTGCAGATGCTGCAACGATTAAAGAAATACTCCAATACA
CGGCTCTTCTACGAAATCATCCGTGCTGGATTCTCACGCTGAGCAATGTT
GCGGATACAGTCCTGACACTATGTGGGGGTGCCTTTATGTTCTTTAAAAT
GCCGCACATCATAGCATGCACGCCCTGCACGGATCCCGGGAGCACACACC
GACGATACATACCCGAGTGTGAGCTTGATGCTCATCGAGACATCTGCTGC
TAGACTCATGCATCTAGGCTCATGCA
UFO10228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED24-RA | 3199 | CG7999-RA | 120..1215 | 9..1076 | 4765 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8193561..8194182 | 343..962 | 2915 | 99.4 | Plus |
| 3L | 28110227 | 3L | 8193334..8193492 | 185..343 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 8191389..8191479 | 9..99 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 8193188..8193276 | 97..185 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:03 has no hits.
UFO10228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:21 Download gff for
UFO10228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 112..1212 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:42 Download gff for
UFO10228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 114..1214 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:38 Download gff for
UFO10228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 114..1214 | 1..1075 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:38 Download gff for
UFO10228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8191383..8191478 | 1..98 | 95 | -> | Plus |
| 3L | 8193190..8193276 | 99..185 | 100 | -> | Plus |
| 3L | 8193335..8193492 | 186..343 | 100 | -> | Plus |
| 3L | 8193562..8194321 | 344..1075 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:42 Download gff for
UFO10228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8184483..8184578 | 1..98 | 95 | -> | Plus |
| arm_3L | 8186290..8186376 | 99..185 | 100 | -> | Plus |
| arm_3L | 8186435..8186592 | 186..343 | 100 | -> | Plus |
| arm_3L | 8186662..8187421 | 344..1075 | 95 | | Plus |
