UFO10230.5prime Sequence
1097 bp (1008 high quality bases) assembled on 2011-11-10
> UFO10230.5prime
CAGTCGACATGTCCTTCGCGGCTATGGCGAATACCAACACAGAAAAACTT
TACATGCAACTAAGCGCATCGGAATTATCAGCAATTATTATGAAAGATTC
ACCCAATTCCAACGACCGTGATGCGGGTTTTTGTTCCGCCAGTTCGGAAA
GCGAAGGCGGAGACGACTTGGTCGTCGAGCACGCGCGCAGTGGCAGTCCC
GACATCAGACCAAAAGGAACAGACTCGGCGGACTCCAAGCCAATAGCCCT
TGTCCGCAACAAACGCAAGAGTTCGGAACCCTTCAAAGTCGTAGGTTTGA
CGACTCCCAACTCTAAATCCATGCCTGGTCCTCCGTCCAGTGCGAGTATG
AATGCAACTGGTCCGCTAAAGAAACGCATACGATACACATCTTCCGCCGA
TTCGGCAGTTGTCCTAACGCCACCAGCCATAGACTCTCCACCGCCCAACA
GTTGCATACCTTCCACGTTGCGCCTGCAGCATGAAATAATGCCTAATCCG
GCACATATATATGTTCGCCATCCGGGAGTTACGACTCTTCACAGATCGCT
TGCTGCCCACCCAGAACAGCTGGAACCACTCGCATTAGTAACGACCAAAA
AGCAATGTGTCGACCAAGCGGGGCCTAAAATAGAGGCCTTTTCCGCATTG
CTAATTGGAAAACAGCCATCCGCCAAAAAAACGTTGAAGGAAAGGACGCA
AAAAGAATCAACGTCATCTTCCTTTTTAGAAGCTAGTCTTAGCGATGAGG
ATCTGAACAAGACGGGATTGGCACCAATTTCGCGACCTCATCAACATCAA
CGCAATTACAAGAATATGACTAGGGAGCGCCGCATTGAGGCGAACGCACG
TGAACGGACCCGTGTACACACCATATCCGCCGCCTACGAAACGCTCCGCC
AAGCTGTCCAGCCTATGCCAGCACTCAAAAACTTTCCAAACTCTCGTTCT
TCGGGTAGCGTGTTCCTATATACTAACTAAGTAGATGCTGGCGAGGAATA
CAGCGCCGATCATCGTACGTCAATGCCACGGTGCCTTAGAAGCCTGTACT
TCACATCTACCGTAGGGTAAATGGACGAGAAGACAGCAGCTTCTAGA
UFO10230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| net-RC | 1662 | CG11450-RC | 281..1323 | 9..1043 | 4905 | 98.7 | Plus |
| net-RB | 2225 | CG11450-RB | 281..1323 | 9..1043 | 4905 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 83356..84279 | 1012..95 | 4360 | 99.1 | Minus |
| 2L | 23513712 | 2L | 87020..87107 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:13:10 has no hits.
UFO10230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:21 Download gff for
UFO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 271..1307 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:46 Download gff for
UFO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 276..1312 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:41 Download gff for
UFO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 276..1312 | 1..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:41 Download gff for
UFO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 83334..84277 | 97..1030 | 98 | <- | Minus |
| 2L | 87020..87112 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:46 Download gff for
UFO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 83334..84277 | 97..1030 | 98 | <- | Minus |
| arm_2L | 87020..87112 | 1..96 | 95 | | Minus |
