UFO10231.5prime Sequence
1097 bp (993 high quality bases) assembled on 2011-11-10
> UFO10231.5prime
CAGTCGACATGAAATTTAAACAAATGGACTTTGTGACGACAACTGGGGAG
GGAAGTTTTCTGCGAAACAAGATTCGTGCATATGCCAAGGATCACCGTGT
TGAGTGCCGCATAAAGGCGAAAGACTCATTGCGCATTGGACTTGGACAGG
TTAAGCAGGAAGTGGCGGCTCTTGAGATGGGCACCAAGGACGTCATTGGA
ATGGCCAGCAGGATCAAGCGTCGCAAGCACGCCACCTCCGAGGATCTGTG
CCGCTTGTCGCTGGGGTTCCTCCAGAGCAATGACAACATCAATGCATTCG
CAGCTATTCCTGGCGCCATTCAGGTTCTGGTTAAGGAGCTAACTGGACCT
CACATTCAACGACAGACAGATGCCGTGGAGTGCTTGTGTAATCTTTCCTT
GGGCGAGGCCCATGTCTCCGAAAAGATTGTCACTTTGGCGGGCAGCTACA
TGGTCACCTACCTTGATGGCAAGGCCGAACGCCTCAAGCGCAGTTGCCTG
TGGACACTGGCCAACGTTCTGGGCACATGCGACAAGGCCGGCAGCGTATT
GCTGCAAATGCAAATAGTACCCAAGCTGTGGAGGCTCTACATCGAGCCCA
ATGGCTGCCAAGAAGATGCGGCCATCTGCCTCTCCCTGGTGGCCACCCGC
TGCCCGCAGCATGTGAGTGACGAGGATCGAAGGTACATTGGCCAGAATCT
GCCTGAGAAGCTCCACGGCCAGCCTGCCAGCGAGTACTTCATGTACATAG
TGCACCAACTGGAAATAGTGACACAGGAGCACAAGTTAGATGCTCAACAG
GCCGAATGCCTGGTGCGTTTCTTTGAAGCCACCTTAGCATCGCCAGCCGA
CCGGCTGTGCCTAATCTACGCCGTGCGTGTAATGACCAATCTGGTAGCCC
TAGTGACACAGTCTAATATTCGCACTGGCAGACCCGCAGAATCTTGTGCA
ACCCTAAACCAGCTCTTCCCTCTGCGAGATCCAGATCTCAACCTGAACGC
GATGCGCTTGCCTCAAGACTGTCTTGCACTTTGAAAGTAGGGATTCCCAA
CCTGATACTGAATAGCTTGCAAATTATACGCCAGCAGGCCTTTCTAA
UFO10231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15443-RB | 1731 | CG15443-RB | 487..1560 | 8..1081 | 5070 | 98.6 | Plus |
| CG15443-RA | 1278 | CG15443-RA | 34..1107 | 8..1081 | 5070 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4461834..4462564 | 1074..345 | 3205 | 97.4 | Minus |
| 2L | 23513712 | 2L | 4462623..4462961 | 346..8 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:13:18 has no hits.
UFO10231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:22 Download gff for
UFO10231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15443-RA | 29..1115 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:51 Download gff for
UFO10231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15443-RA | 29..1115 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:43 Download gff for
UFO10231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15443-RA | 29..1115 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:43 Download gff for
UFO10231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4461820..4462563 | 346..1092 | 97 | <- | Minus |
| 2L | 4462624..4462965 | 1..345 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:51 Download gff for
UFO10231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4461820..4462563 | 346..1092 | 97 | <- | Minus |
| arm_2L | 4462624..4462965 | 1..345 | 98 | | Minus |
