UFO10232.5prime Sequence
1081 bp (986 high quality bases) assembled on 2011-11-10
> UFO10232.5prime
CAGTCGACATGCATTTTTACAAGTACATTTTACTCGGTATTTGCGGCTTA
ACGGTAAGCGATGCACTTGCCGTGTACGATGCCTCCGGACGCTTTAATCT
CAGTGCCAGTTGCCCGGATTCCTTCTGCAGCTTAAGTGATCGGCCAGTGG
CATACTCTGCGACTCCGGCTCTTCAGCTCCGGGAATTGCACTTGAGAAAC
TGCAGCCGGCAATCGATCACATGGCTGGTTCTGCAACTTACACCTGGTCT
TCGCACCTTGGTTATCCGCAACTGTGCCACCTACCACATTAGCAAGGAGA
GTCTGAGGCCAGTGGAAAATCTAACCTCCCTGCAGATGCAGGGCACTAGT
CTTGGCGTCCTCCGGGATCAGATCTTTAATGCAGTGCCTCGTTTGGAGAT
CCTGCAGCTAAGTCAGAACTTCATCCACACGGTTCACGTAGCCGCCTTCC
AGGGCTTATCCAAACTAAGATTACTGGGTCTGCAAGGGAATGCGATAGCT
GAAATCCTGTCTAGCACACTTGATCCTCTGATGGAGCTAGTCCATCTGGA
CTTAAGCAGGAATGAGCTCACAACTTTGCCACAAAACATCTTTGCTAAAA
ATAAGAAGCTACAAACCCTGTTACTCAATGGCAACCCATTGAGAATTTTA
ATGCCAGATGTACTAGGCTCTCTACCCAATCTTCGACTGCTCGACTTGGG
ACATGCTGCTGAATTGGAGGTGATGACGCTAAACCTTACCAATGTGCAGA
ATTTAGTTCTGGAGGGGAGTAGTCTTAGCAGTTTAGTCATCAACGGAGGC
TTTATCAAACTGCACGCGGGGAACAATGAGCTGAATCATCTGCAAGTGGG
AAACAAGAGCTCTGTGATTGAGATGGATTTGCATGGTAATTTGTTGAATG
GAAATGATACGGCCGCCCTTCTCAGGGAATGTGATCTGCAAGCTGGATCT
GTCAAAATAGATCGAAGCATTGCCCAGCATGAAGCGATTGATGCTTCGCA
CCCAGAGCTGTGATTTGCCCAGTTTGAAGTTTCTGAATTTGGACATTCAG
TGTCGGTGGCCTCGGATCGCATCCTCTCTAT
UFO10232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18249-RC | 2022 | CG18249-RC | 51..1103 | 7..1042 | 4865 | 98.3 | Plus |
| CG18249-RB | 1983 | CG18249-RB | 51..1103 | 7..1042 | 4865 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8220196..8221116 | 7..927 | 4590 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:26 has no hits.
UFO10232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:23 Download gff for
UFO10232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RC | 51..1120 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:56 Download gff for
UFO10232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RB | 46..1115 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:48 Download gff for
UFO10232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18249-RB | 46..1115 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:48 Download gff for
UFO10232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8220191..8221272 | 1..1063 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:56 Download gff for
UFO10232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4045913..4046994 | 1..1063 | 97 | <- | Plus |
