UFO10233.5prime Sequence
1082 bp (955 high quality bases) assembled on 2011-11-10
> UFO10233.5prime
CAGTCGACATGGTTGACAACAGCACTAGCAACAACTCCTCGGTTCTGGGC
TTGCCCAGCAGTGGACATGTTAGCAACGGCTCCGGTAGCTCGGCACAACT
TGGGGCGGGAAATCCGCACGGTAACCAGGCCAACGGAGCGTCCGGCGGCG
TTGGCTCAATGAGCGGATCAGCTGTGGGCGCTGGAGCTACGGGAATGACC
GCCGATCTCTTGGCAAGCGGCGGTGCAGGAGCACAAGGCGGTGCGGATCG
CTTGGACGCGTCCAGCGACAGTGCTGTCAGTTCGATGGGCTCCGAGCGAG
TGCCGTCCCTCTCCGACGGCGAGTGGGGTGAGGGCAGTGACTCCGCCCAG
GATTACCATCAGGGCAAGTACGGAGGCCCCTACGACTTCAGCTACAACAA
TAATTCACGGCTTAGCACCGCCACACGTCAGCCGCCGGTGGCGCAGAAGA
AGCATCAGCTGTACGGCAAGAGGGATCCCCATAAGCAGACGCCATCGGCT
TTGCCACCAACAGCTCCACCAGCAGCCGCGACTGCAGTCCAATCGCAGAG
TATCAAGTACGAGTACGATGCTGGGTACGCCTCCTCGGGAATGGCCAGCG
GTGGAATCAGTGAGCCAGGAGCGATGGGACCCGCTCTATCCAAGGACTAT
CATCATCATCAGCCTTACGGCATGGGAGCCAGCGGCAGCGCCTTTTCCGG
CGACTATACAGTACGACCATCGCCAAGGACTTCGCAGATTTGGTGCAACT
AAATCATACCTACTCGCTACCCCAGGGAAGTGGATCCCTTCCCAGACCCC
AGGCACGCGATAAGAAGCCCCTGGTCGCCACTAAAACCGCATCGAAGGAG
CGAGGGCCGGCAACAGCAGCAGTGTTGGCGGGAAACAGCAGCAACTTGCG
GGAAGAGCATCTGACACGCGATGAAAAGCGGCGCTCGATCCCTGACATAC
CATTTCAGTGCCGGAAATTCATTAACCCTGCCCATGGACGGGGTCAACGG
AGCGCTTGTCGAAGTACGACTAGCGAGAACAGTTGTTCGGCTGATTCCGC
GACTCGTCGGGCGTGGAAGAAACAGGTCGCTG
UFO10233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 4746 | CG43286-RN | 2112..3187 | 8..1082 | 4850 | 97.5 | Plus |
| cnc-RM | 4737 | CG43286-RM | 2103..3178 | 8..1082 | 4850 | 97.5 | Plus |
| cnc-RP | 4261 | CG43286-RP | 795..1870 | 8..1082 | 4850 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23188108..23189119 | 1020..8 | 4545 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:13:31 has no hits.
UFO10233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:24 Download gff for
UFO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RD | 98..1148 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:58 Download gff for
UFO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RP | 789..1839 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:50 Download gff for
UFO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RP | 789..1839 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:50 Download gff for
UFO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23188075..23189125 | 1..1053 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:58 Download gff for
UFO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19013797..19014847 | 1..1053 | 97 | | Minus |
