UFO10234.5prime Sequence
1066 bp (977 high quality bases) assembled on 2011-11-10
> UFO10234.5prime
CAGTCGACATGCGCAGTTTTTGTTGTTGTTTTTATCCGGCTGCTGTGGCG
TTGCACTGCGTATTACTGTTTTACACTTTTTTTTTACTTTTTAGAGCGTC
CGCGTTGCGGCGACGCGTTGTAAGCGGTTCGAAAGGTAGCGCAGCACTGG
CGCTCTGCCGCCAATTCGAACAGCTGAGCGCCAGCCGAAGAGAGAGAGCC
GAAGAGTGCCGAACGACGCAGCTCCGCTACCACTACCACCGCAATGGCGC
TCAGTCGCGGTCGCTGTGCGCTGCTGTGCTCTGCTGTAAGCGCTCTTACA
TTCCGCGCCCGAATTTTTCGTGCTTTTCCCTTGTTTTCCCTGTGGGCCAG
CGTTTCGCTGCTGCTCGGACTCGGTTTGGGCCAACACTTGTCGCCTCTTG
GCCATTATGCAACGACAGCGAAACGAAGGTGCTCACGAAGTGGCCAAGCT
GCTCTCTGATTGGTCGGCGGTCAGTGCCACGAGGCCAGCCGAAGTTCTCT
CGCGAGAACCCAAGAGCACTCTCTCCCTCTCTTTTGGGAGAGATGAGAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCATGCGGCATCAGCACCTT
GTCGCCTTGCGTATATATTTGCCCATGTGAAAACGGGGCGAAGAGTTGTC
ATATGCACGTTAATCAAACTGTGAAACTCACCAAGATGCTGAAACGAAAA
CAAATTCTCATAACCTTTAAGATAGCAAGCTTTCACCGTACCGCCATCTG
CATATTGTGTAGACTG
UFO10234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amn-RA | 3953 | CG11937-RA | 2567..3108 | 7..548 | 2710 | 100 | Plus |
| Hers-RD | 8024 | CG32529-RD | 1..140 | 148..9 | 700 | 100 | Minus |
| Hers-RG | 6524 | CG32529-RG | 1..61 | 148..88 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19886953..19887494 | 548..7 | 2710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:10 has no hits.
UFO10234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:17 Download gff for
UFO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amn-RA | 2560..3114 | 1..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:16 Download gff for
UFO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amn-RA | 2560..3114 | 1..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:14 Download gff for
UFO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amn-RA | 2560..3114 | 1..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:14 Download gff for
UFO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19886947..19887501 | 1..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:16 Download gff for
UFO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19780980..19781534 | 1..552 | 99 | | Minus |
