UFO10235.5prime Sequence
1049 bp (927 high quality bases) assembled on 2011-11-10
> UFO10235.5prime
CAGTCGACATGCGGTATCTGTGCGTTTTTTCCTTAACACTTATCCTTTGC
TGCCTTTCAATAAAGGCTCAGAGCTTAAATTGCACCAGGCTTCGAGAAAA
TTGTCGTCCTTGCACCCGCCGCTTGGTGGATCCTATTAACGACCTGGAAT
TCATTAATAGCGATTGTAGGGAGAAACTTAGAGGACGTTGGATTTGGCGG
GATGTAAGGCGTTGTGATATGCAAATTGTTGCGTGCGAAAATCATGAAAC
CCGACTGGATTGCGAGAATGTGGCTAGACTAACAGGCATGAGACGGATTC
GTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAATAG
GCCAGGTTTCACCGTACACGCACATCTTGCGATATATGTGTAGAACTGCC
GGAAATCGTCGTGTATTCACTCAGAGCGATGATACGTTTCAGTTTGCTCA
TGAAACGTGTACAGGTGACACTATCCCATATCACAGCTCACGTCTTCATG
CATACGAATCGATGACATCATCAGCGCAGATGTATAAGCGATAAACTGGC
TATTTTCTTACGCTTAAGCTAATCACGACGCGGTAGGTCTGACACTGCG
UFO10235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ej-RA | 403 | CG7588-RA | 13..306 | 9..302 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15660772..15661003 | 240..9 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 15660646..15660707 | 302..241 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:17 has no hits.
UFO10235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:18 Download gff for
UFO10235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ej-RA | 13..306 | 9..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:20 Download gff for
UFO10235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ej-RA | 13..306 | 9..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:17 Download gff for
UFO10235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ej-RA | 13..306 | 9..302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:17 Download gff for
UFO10235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15660646..15660707 | 241..302 | 100 | <- | Minus |
| 3L | 15660772..15661003 | 9..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:20 Download gff for
UFO10235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15653746..15653807 | 241..302 | 100 | <- | Minus |
| arm_3L | 15653872..15654103 | 9..240 | 100 | | Minus |
