UFO10236.5prime Sequence
1064 bp (964 high quality bases) assembled on 2011-11-10
> UFO10236.5prime
CAGTCGACATGAAATTCCTGATCGTCTTTGTAGCAATCTTCGCTTTTGCT
TTGGCTAACGAAGCGCAAATTATTAACTTGGAATCCGATGTTGGACCCGA
AAACTTTCAGTGGTCCTTCGAGACCAGCGATGGCCAGGCGGCTAACGCTA
AGGGACAGTTGAAGTACCCTAACACCGACCACGAGTCCCTTGCTGTCCAG
GGATCCTTCCGCTTCGTTGCCGATGATGGCCAGACCTACGAAGTCAACTA
CATCGCCGATGAGAACGGATTCCAGCCCCAGGGTGCCCATCTTCCCGTTG
CCTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAGACGTTTC
AGTTTGCTCATGGAGACGTGTACAAGGTGAACAACTATCCATATCACAGC
TCACGTCTTTCATTGCTTACGAAATTCGGATGACATTCATCAGCGCAGAA
TGTTGATTAAGGCGGATAAACTGGCTACTACTACGTCTTAATAGGCGTAA
ATTCAACTGACCGA
UFO10236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ae-RA | 476 | CG10529-RA | 39..337 | 7..305 | 1495 | 100 | Plus |
Lcp65Ag1-RA | 517 | CG10530-RA | 266..371 | 201..306 | 410 | 92.5 | Plus |
Lcp65Ag2-RA | 543 | CG10534-RA | 266..371 | 201..306 | 410 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6137722..6137911 | 305..116 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6137972..6138080 | 115..7 | 545 | 100 | Minus |
3L | 28110227 | 3L | 6133162..6133267 | 306..201 | 410 | 92.5 | Minus |
3L | 28110227 | 3L | 6134843..6134948 | 306..201 | 410 | 92.5 | Minus |
3L | 28110227 | 3L | 6130559..6130664 | 306..201 | 395 | 91.5 | Minus |
3L | 28110227 | 3L | 6145166..6145289 | 173..296 | 320 | 83.9 | Plus |
3L | 28110227 | 3L | 6147571..6147680 | 306..197 | 295 | 84.5 | Minus |
3L | 28110227 | 3L | 6150442..6150551 | 306..197 | 295 | 84.5 | Minus |
3L | 28110227 | 3L | 6136388..6136482 | 306..212 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:25 has no hits.
UFO10236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:18 Download gff for
UFO10236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 1..300 | 9..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for
UFO10236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 33..341 | 1..310 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:22 Download gff for
UFO10236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 33..341 | 1..310 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:22 Download gff for
UFO10236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6137722..6137911 | 116..305 | 100 | <- | Minus |
3L | 6137972..6138085 | 1..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:25 Download gff for
UFO10236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6130822..6131011 | 116..305 | 100 | <- | Minus |
arm_3L | 6131072..6131185 | 1..115 | 97 | | Minus |