Clone UFO10236 Report

Search the DGRC for UFO10236

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:102
Well:36
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptLcp65Ae-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10236.5prime Sequence

1064 bp (964 high quality bases) assembled on 2011-11-10

> UFO10236.5prime
CAGTCGACATGAAATTCCTGATCGTCTTTGTAGCAATCTTCGCTTTTGCT
TTGGCTAACGAAGCGCAAATTATTAACTTGGAATCCGATGTTGGACCCGA
AAACTTTCAGTGGTCCTTCGAGACCAGCGATGGCCAGGCGGCTAACGCTA
AGGGACAGTTGAAGTACCCTAACACCGACCACGAGTCCCTTGCTGTCCAG
GGATCCTTCCGCTTCGTTGCCGATGATGGCCAGACCTACGAAGTCAACTA
CATCGCCGATGAGAACGGATTCCAGCCCCAGGGTGCCCATCTTCCCGTTG
CCTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAGACGTTTC
AGTTTGCTCATGGAGACGTGTACAAGGTGAACAACTATCCATATCACAGC
TCACGTCTTTCATTGCTTACGAAATTCGGATGACATTCATCAGCGCAGAA
TGTTGATTAAGGCGGATAAACTGGCTACTACTACGTCTTAATAGGCGTAA
ATTCAACTGACCGA

UFO10236.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ae-RA 476 CG10529-RA 39..337 7..305 1495 100 Plus
Lcp65Ag1-RA 517 CG10530-RA 266..371 201..306 410 92.5 Plus
Lcp65Ag2-RA 543 CG10534-RA 266..371 201..306 410 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6137722..6137911 305..116 950 100 Minus
3L 28110227 3L 6137972..6138080 115..7 545 100 Minus
3L 28110227 3L 6133162..6133267 306..201 410 92.5 Minus
3L 28110227 3L 6134843..6134948 306..201 410 92.5 Minus
3L 28110227 3L 6130559..6130664 306..201 395 91.5 Minus
3L 28110227 3L 6145166..6145289 173..296 320 83.9 Plus
3L 28110227 3L 6147571..6147680 306..197 295 84.5 Minus
3L 28110227 3L 6150442..6150551 306..197 295 84.5 Minus
3L 28110227 3L 6136388..6136482 306..212 265 85.3 Minus
Blast to na_te.dros performed on 2014-11-27 20:12:25 has no hits.

UFO10236.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:18 Download gff for UFO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..300 9..309 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for UFO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 33..341 1..310 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:22 Download gff for UFO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 33..341 1..310 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:22 Download gff for UFO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6137722..6137911 116..305 100 <- Minus
3L 6137972..6138085 1..115 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:25 Download gff for UFO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6130822..6131011 116..305 100 <- Minus
arm_3L 6131072..6131185 1..115 97   Minus