UFO10238.5prime Sequence
999 bp (896 high quality bases) assembled on 2011-11-10
> UFO10238.5prime
CAGTCGACATGCTGCTGTGTCGCGTTGTGCTGGCACTGCTGCTGCTGGTG
CTACTCCACTACTGCCAGGCGAAGGATGAAGGTGAAACCACACAGCGTGG
AGCAGTGCTGGTCTCACTGACTGAGAACATGGCCAAATCGGCAGGATCGC
AGCTCGTCCAAGCCGATCCCTTCATCTCGCGCAACCAGAAGCAGTGCTTT
GAGACCCGCAGTCTGGTGTCCTGCATCAAGTACAAGACCAGCAAATTGAT
CTGGAAACTGGCCACTAACAGCATGGGCTTCTTCCCCAGCGAGTACGGGC
GCGATCTGGCCGGGGACAGAGGCCGCTGGCTGAGATTAGTCCAGTTGGGC
GAGCCCGCCGATGAGGTGGTCGTGTTCAACGACGCTAAGAGCTTAGAAGG
TGACAGTGAACTGACGATGATTCTCAAGTTCCTGAAAAGGGCAATGGAGA
CGTTTGGGCGAAACCACGGACTCCAACTGAGGCTGAACAGCGAGGGTGGA
GCGAGAGTCATGGAGGAATCGGAAGCACGATTGAAGCGCAAGAAGAAGAA
GTGGCTCATTATCCTGCCCCTCGTCATTCTGATGAAGATTGCCCACCTGA
AGATGACTTTGGTGAGCATGCTGATGGGCGTGCTCGGCATGAACGTGCTG
CTGGTCGGCGGCGTGGGCTGGCTGATCCACTACCTTAAGTACAAGACCAT
GTGCAAGATCCACCCGCATCTGGTGCAGACGCACTCGCACGTCTACGAGT
CAGATCCCTCGGACTACTCCCAGTTCGTGGCAGCGGTAGCTACTCAACTC
GTACTCCCCGTACAGCTCCGGATCGGGGCTCCTCACGAGTTGGCGGCAAT
AGCTACAGCAGACTGGGCCACGAGTAGTCTACAACGCGCACAACTATCTG
ACCGATCAGCAGCGAAACAGGCCAGCCTTTCTAACATCGTTTGGCGCGCG
GCAGTTAGTGTCAATCATATCTATCCTATCTGATTCCACTAGGCTAGGA
UFO10238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi1-RA | 1161 | CG15585-RA | 95..1009 | 7..911 | 4330 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6173643..6174038 | 7..402 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 6174420..6174805 | 522..899 | 1585 | 97.7 | Plus |
| 3R | 32079331 | 3R | 6174233..6174359 | 396..522 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:05 has no hits.
UFO10238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:26 Download gff for
UFO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi1-RA | 1..924 | 9..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:16 Download gff for
UFO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi1-RA | 90..1020 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:04 Download gff for
UFO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi1-RA | 90..1020 | 1..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:04 Download gff for
UFO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6174237..6174359 | 400..522 | 100 | -> | Plus |
| 3R | 6174421..6174830 | 523..920 | 96 | | Plus |
| 3R | 6173638..6174035 | 1..399 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:16 Download gff for
UFO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1999959..2000081 | 400..522 | 100 | -> | Plus |
| arm_3R | 1999360..1999757 | 1..399 | 98 | -> | Plus |
| arm_3R | 2000143..2000552 | 523..920 | 96 | | Plus |
