UFO10240.5prime Sequence
1056 bp (966 high quality bases) assembled on 2011-11-10
> UFO10240.5prime
CAGTCGACATGAGAATCATAACAGTCCTGTCTGTTTCGCTCTTGGTGGGT
CTTGTGGCCATAAGCCAGGCAGACGACAGTAGTCCAGGATTCTTCCTAAA
GATCACCAAGAACGTACCGCGGCTGGGCAAGCGAGGCGAGAACTTTGCCA
TAAAGAACCTAAAGACCATTCCTCGCATAGGACGCAGTGAGCACAGCTCT
GTTACTCCTCTGCTGGCGTGGCTATGGGATTTGGAAACGAGTCCAAGCAA
GCGGCGCTTACCCGCAGGGGAATCCCCAGCGAAGGAGCAGGAACTTAACG
TGGTGCAGCCCGTCAACTCGAATACGCTCCTTGAGCTGCTTGACAACAAC
GCTATTCCCAGCGAGCAGGTGAAGTTCGTCCACTGGAAGGATTTCGATCG
TGCCCTCCAGGCAGATGCCGATCTGTACAGCAAGGTTATCCAGCTGGGAC
GCCGTCCGGACCAGCACCTCAAGCAGACTCTCAGCTTTGGCAGCTTCGTT
CCCATCTTCGGCGACGAGCAGAATCCGGACTTTATGATGTACAAAAACAA
CGAGGATCAGGAACTTTACGGCGGGGGAAATCGCTACGATCGCCAATTCC
TCAAGTACAACATCCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCA
TCTGCCGACATGAAGCCATCACAAACGGCATGATGACTGATCGCCAGCGC
ATCAGCCCCTTGTCGGCTGCGTATATATTGCCCATGTGAAACGGGGCAGA
GTGTCAATATGCCACGTTTAATTCAAACTGTGACTCACCCAGGATTGCTG
ACCGAA
UFO10240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ETH-RA | 755 | CG18105-RA | 24..633 | 8..617 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24794792..24795214 | 617..195 | 2115 | 100 | Minus |
| 2R | 25286936 | 2R | 24795273..24795459 | 194..8 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:24 has no hits.
UFO10240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:27 Download gff for
UFO10240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETH-RA | 1..609 | 9..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:24 Download gff for
UFO10240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETH-RA | 18..633 | 1..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:10 Download gff for
UFO10240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETH-RA | 18..633 | 1..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:10 Download gff for
UFO10240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24794792..24795214 | 195..617 | 100 | <- | Minus |
| 2R | 24795273..24795465 | 1..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:24 Download gff for
UFO10240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20682315..20682737 | 195..617 | 100 | <- | Minus |
| arm_2R | 20682796..20682988 | 1..194 | 98 | | Minus |
