UFO10242.5prime Sequence
1048 bp (949 high quality bases) assembled on 2011-11-10
> UFO10242.5prime
CAGTCGACATGAAATCCTTTAGCGGAGGTCTGTTCTTTGCCCTTCTGGTG
GGAGCCAGTTGGGCAGCTCCCCATGGTGGACACGCCACCAGCTACAGTTC
GGTGACCAAGCACGAAGGACCCGTCCACAAGAGCCTGGGCTACGGATACG
ATCACGATGTGGTCAGCGCTTACGGTGGCATCTACGGACACGGCTATCCG
AGTGTCGGCCATTCGGGCTACGGATACGGATACGACAAGCACGAGCCCCA
TCACTATCCCAAGTACCAATTCGACTACGGCGTCAAGGATGCCCACACCG
GAGACCAGAAGAGCCAGTGGGAGACGCGGGATGGCGACAAGGTCAAGGGC
AGCTACTCCCTCAAGGAATCGGATGGCACCACCCGAGTGGTGGAGTACAC
CGCCGATGACCACAATGGCTTCAACGCAGTGGTAAAGAAGCTCGGCCACG
CCCACCACCCCCAGGTCTACCACAAGGGCTACGGACACGGCGATATCTAC
GACGCCGACTACGGCTACGGTCACGATGTGGCGCAATATGGCGGATACGG
ATACGGACACGGAGGCCACGCCAGTAGCTACGTAAGCGTGAAGCAGCTGC
ACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGCAG
CATCACAACGCATGATGACCTGATCGCAGCGCATCAGCACCTGTCGCTTG
CGTAAAATATTTGCCCATGTGAAACGGGGCGAAGAAGTGTCCATATGCAC
GGTTATTCAACTGTGAAACTCACCCAGAATGGCTGAAACGAAAACATA
UFO10242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bb-RA | 771 | CG9290-RA | 43..640 | 5..602 | 2975 | 99.8 | Plus |
| Cpr76Ba-RA | 781 | CG9283-RA | 343..513 | 252..422 | 225 | 76.9 | Plus |
| Cpr62Bc-RB | 1017 | CG1919-RB | 366..403 | 390..427 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19519691..19520288 | 5..602 | 2975 | 99.8 | Plus |
| 3L | 28110227 | 3L | 19517820..19517990 | 422..252 | 225 | 75.4 | Minus |
| 3L | 28110227 | 3L | 1841012..1841049 | 427..390 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:43 has no hits.
UFO10242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:29 Download gff for
UFO10242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 1..597 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for
UFO10242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 40..645 | 1..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:19 Download gff for
UFO10242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 40..645 | 1..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:19 Download gff for
UFO10242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19519688..19520293 | 1..608 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:33 Download gff for
UFO10242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19512788..19513393 | 1..608 | 99 | == | Plus |
