UFO10243.5prime Sequence
1087 bp (964 high quality bases) assembled on 2011-11-10
> UFO10243.5prime
CAGTCGACATGGACAAGCCTCAGTACGCTCGCGTGGTCGAGATCCTTGGA
CGCACTGGATCCCAAGGGCAGTGCACCCAGGTGCGGGTGGAGTTCCTCGG
CGACCAAAGCCGCCAGATTATTCGGAATGTCAAAGGACCTGTTCGCGTGG
GCGACATCCTGTCGCTGCTGGAAACTGAACGCGAGGCCAGGAGACTGCGC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTT
GCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC
TCACCGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCGGG
CAAGAATGTGAATAAATGCGGATAAACTTGTGCTTATTTTTTCTTTACGT
CTTTAAAAGGCCGTATATCCAGCTGACGGTCTGGTTATAGGTACATGAGC
ACTGACTGAATGCTCAATGTTCTTACGATGCCATTGGGATATTCACGTGT
AATTCAGTGATTTTTTTCCATTAGCTCTTAGCTTCTG
UFO10243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS28a-RA | 304 | CG15527-RA | 50..242 | 8..200 | 965 | 100 | Plus |
| RpS28b-RB | 972 | CG2998-RB | 133..282 | 51..200 | 330 | 81.3 | Plus |
| RpS28b-RA | 520 | CG2998-RA | 133..282 | 51..200 | 330 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30022407..30022599 | 200..8 | 965 | 100 | Minus |
| X | 23542271 | X | 9554755..9554904 | 51..200 | 330 | 81.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:49 has no hits.
UFO10243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:29 Download gff for
UFO10243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28a-RA | 1..195 | 9..203 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:39 Download gff for
UFO10243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28a-RA | 43..242 | 1..200 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:21 Download gff for
UFO10243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28a-RA | 43..242 | 1..200 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:21 Download gff for
UFO10243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30022407..30022602 | 1..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:39 Download gff for
UFO10243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25848129..25848324 | 1..200 | 98 | | Minus |
