UFO10244.5prime Sequence
1091 bp (948 high quality bases) assembled on 2011-11-10
> UFO10244.5prime
CAGTCGACATGAGTGACAGTTCCAGCTCCAATTGCTCGAAGGATCGTGCT
AAGCCGGTGGAAACGCTGGTTTTGGCAAACTATGCCCTGAAAGCCGAGCA
GAAGAAGGCCCAAGGACAGGGTGGTCGAAAGGAGGACGAGCGCATCACCA
CTGCGGTTATGAAGGTCCTCGAGGGCTACGACTGGAATCTAGTCCAGGCA
TCAGCCAAGGCGCCCACGGACCGCAAAAAGGAGCACATCAAGCGACCGAT
GAACGCCTTCATGGTTTGGGCCCAGGCAGCCCGCAGGGTCATGTCCAAAC
AGTATCCGCATCTGCAGAACTCCGAACTGAGCAAATCGCTGGGCAAGCTG
TGGAAAAATCTAAAGGACAGTGATAAGAAGCCCTTCATGGAATTCGCCGA
GAAGCTTCGAATGACCCACAAGCAGGAGCATCCGGACTACAAGTACCAGC
CGCGGCGCAAGAAAGCGCGGGTGTTGCCGTCCCAGCAAAGCGGTGAAGGG
GGATCCCCGGGTCCAGAGATGACGTTATCCGCCACTATGGGTAGCTCCGG
GAAGCCAAGGAGCAGCAATTCCAATGGCCAGAGGCGAGCGGGCAAGGGAA
ATGCAGCTGCTGATCTGGGCAGCTGCGCCTCGACCATCTCCCATGCCAAT
GTGGGCTCGAACTCCTCGGATGTCTTCAGTAATGAGGCCTTCATGAAATC
CCTGAACAGTGCCTGTGCGGCCAGTTTGATGGAGCAGAGCCTCATCGAAA
CTGGCCTGTACTCTCCGTGCTCCACGGGCCAGTTCAATGTCCTCGCTGAC
GCCCCCAGCCACGCCCTACAATGTAGCCCCATCCAATGCAAAAGCGTCGG
CAGCAAATAACCCCAGTCTTTTGCTAACGCAACTAAGTGAGCCAGTTGCA
AATGCAAGCGATGGTGATGGAGTTCTCTCGAAGCAGGCAGAAGAATATGT
GGCCATAGGTGAGTCAATATCAGGGCCAATCGGCGGGAGTTCGAATGAGC
CGAGAGGAGAGCAGTCAGAAATGACTCTGAAGAACCATCAAATGTTATGT
TGCTACACGGCCAGTCCGGTGGACCTACCTGCTATCCCTAC
UFO10244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox100B-RA | 2049 | CG15552-RA | 187..1260 | 9..1071 | 4755 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31081892..31082529 | 356..992 | 2860 | 98.3 | Plus |
| 3R | 32079331 | 3R | 31065439..31065639 | 9..209 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 31073212..31073362 | 205..355 | 740 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:57 has no hits.
UFO10244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:30 Download gff for
UFO10244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 74..1085 | 1..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:42 Download gff for
UFO10244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 178..1189 | 1..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:25 Download gff for
UFO10244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 178..1189 | 1..1009 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:25 Download gff for
UFO10244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31065430..31065638 | 1..208 | 98 | -> | Plus |
| 3R | 31073216..31073362 | 209..355 | 100 | -> | Plus |
| 3R | 31081892..31082547 | 356..1009 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:42 Download gff for
UFO10244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26898938..26899084 | 209..355 | 100 | -> | Plus |
| arm_3R | 26891152..26891360 | 1..208 | 98 | -> | Plus |
| arm_3R | 26907614..26908269 | 356..1009 | 97 | | Plus |
