UFO10245.5prime Sequence
1113 bp (993 high quality bases) assembled on 2011-11-10
> UFO10245.5prime
CAGTCGACATGCACATTTCTGCTGAGGTCAGTTCGACCACCTCAAATCAA
ATACAGCAACAGCAGCAGCAACATCAGCAGCAGCAGCAACATCAGTTGTT
GCAGCACCAGCAACAACAGACAGCAACAACGACCACAACGAAGCGGCGGA
ATGCTGAGTCCTCTGCCAGCAGCAATAACAACAACAACAACAATACCAGC
ACCACCAACAATAATAATACTAACAATAACAACAACAGCACCACGAACAA
CAACAACAACAACAATAATAATAATGTTAAAACAAAGCCCGTGGACACGA
GTCCCTACTTAACCCCCGAGAATCTCATCGAGCGCACCGTCGACGTCCTG
CTCGCCGAACATCCTGGCGAGCTGGTCAAGACGGGATCTCCACATGTGGT
CTGCACCACATTGCCCACGCACTGGCGCTCAAACAAAACTCTACCGATCG
CCTTCAAGGTTTTGGCACTGGGCGAGGTCATGGATGGCACTATAGTCACC
ATTCGAGCCGGAAACGATGAGAACTTCTGCGGGGAACTGAGAAACTGCAC
GGCCGTGATGAAAAATCAGGTGGCCAAGTTCAATGATCTGCGGTTCGTGG
GCAGAAGCGGAAGGGGCAAGAGCTTCACACTGACGATTGTCATCTCAACG
AACCCCATCCAGATAGCCACCTACACCAAGGCCATCAAGGTGACCGTGGA
TGGGCCGAGGGAACCAAGATCGAAAGTGCGACACCAGGGATTCCATCCGT
TCGCCTTTGGGCCGCAACGTTTCGGACCGGATCCACTTATGGCCGGATTG
CCCTTCAAGTTGCCAGGTAAGCGGAAAAAGTGGAGGAGATTCCGGGGAAT
CAGGATTCGGAAGGCTTAAGCGCAACATCGCCGCCACACTGAGAGAAATC
CGGCTATTCGATTAGTCTAAAAGCAAGCTTTCTAGACCATTCGTTTGGCG
CGGCGGGCCCAGGTAAGTGTTCATATCATAATCATATCATAATCATAATC
ACCAACTAGGCCTAGGAGAATCCTGGTCATGACTAGTGGCTTGGATTCTC
ACCAATTAAAAAAACGCCGGCCGCCAACCGAGCGTTCTGAACAATCAATG
ATTCTGGAGGTCA
UFO10245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RunxB-RC | 3355 | CG42267-RC | 280..1088 | 9..817 | 4030 | 99.9 | Plus |
| RunxA-RD | 4831 | CG34145-RD | 1320..1594 | 432..706 | 460 | 78.7 | Plus |
| RunxA-RC | 4831 | CG34145-RC | 1320..1594 | 432..706 | 460 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20540881..20541272 | 9..400 | 1960 | 100 | Plus |
| X | 23542271 | X | 20553569..20553880 | 615..922 | 1315 | 97.8 | Plus |
| X | 23542271 | X | 20541827..20542045 | 398..616 | 1095 | 100 | Plus |
| X | 23542271 | X | 9288368..9288569 | 412..613 | 335 | 77.7 | Plus |
| X | 23542271 | X | 20604115..20604281 | 598..432 | 325 | 79.6 | Minus |
| X | 23542271 | X | 20695181..20695391 | 509..719 | 320 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:06 has no hits.
UFO10245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:31 Download gff for
UFO10245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RB | 12..937 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:46 Download gff for
UFO10245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RC | 107..925 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:29 Download gff for
UFO10245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RC | 275..1093 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:29 Download gff for
UFO10245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20540876..20541270 | 1..398 | 98 | -> | Plus |
| X | 20541828..20542044 | 399..615 | 100 | -> | Plus |
| X | 20553570..20553880 | 616..922 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:46 Download gff for
UFO10245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20412855..20413071 | 399..615 | 100 | -> | Plus |
| arm_X | 20411903..20412297 | 1..398 | 98 | -> | Plus |
| arm_X | 20424597..20424907 | 616..922 | 97 | == | Plus |
