UFO10246.5prime Sequence
1113 bp (986 high quality bases) assembled on 2011-11-10
> UFO10246.5prime
CAGTCGACATGAAATCCATCCTTGTGCTCGCCTGCCTTTTAAGTGCCCTG
TGCCTAGCTGCTGCCGCTCCGGATGCAGAGATTGTTGACCTGGTGTCCGA
TGTCAATGCCGATAGCTATAGCTACAAATTTGAGACAAGCGATGGCACCA
AGCAGGAGCAGCACGGCTCCCTGAAGAGCCTTGGTCCCGAGGAGGATGCC
TTGCAGGTGGCCGGATCCTTCAGCTTCGTAGGAGACGACGGACAGACGCA
TGCCATCAGCTACGTGGCCGATGAGAACGGATTCCAACCCCAGGGCGAGG
ATATTCCCCACCTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTTGCTCATGGAAACGTGTAACACGGTGAACACTATC
CATATCACCAGCTCACGTCTTTCATGCCATACGAATTCGATGAGCATCAT
CAGGCGGCCAAGAATGTGAATACGCGATAAACTTGTGCTTATTTTTCTTT
ACGGTCTTGAAAAGCGTAATATCAGGCTGAACCGGCTGGTAAGTACTTGG
ACACGTGGACTGA
UFO10246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Aa-RA | 500 | CG7287-RA | 30..335 | 9..314 | 1530 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 243..326 | 212..295 | 180 | 81 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 242..325 | 212..295 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6151333..6151638 | 9..314 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 6148353..6148609 | 37..293 | 1150 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:39 has no hits.
UFO10246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:24 Download gff for
UFO10246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Aa-RA | 21..338 | 1..318 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:03 Download gff for
UFO10246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Aa-RA | 21..338 | 1..318 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:53 Download gff for
UFO10246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Aa-RA | 21..338 | 1..318 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:53 Download gff for
UFO10246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6151324..6151638 | 1..314 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:03 Download gff for
UFO10246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6144424..6144738 | 1..314 | 98 | == | Plus |
