UFO10247.5prime Sequence
1097 bp (1000 high quality bases) assembled on 2011-11-10
> UFO10247.5prime
CAGTCGACATGAGCATCAGCACTTTCAACTTCCAGTTCTACAACTACAAG
CTTAGCCCGTCCTCACCGGGATTCGGCAGCACAGCCTCCCGTTCCTCGTC
CTCATGCATCAGCGAACTGGAAATGGACATTGATGAGGACATGTCCGCCC
AGCCCACCATCACCTCCACGCCCAAGCCGCGCTTTACCAGCCAACTGGCC
GTGGAACTGGCCAAAACGGAGCCGGGTAATGGCATATCCCCACTGCGACC
CAAATTGCATACGGCCCAGAAACGCTGGTCCATGGAGTTGAGGGAAAAAG
TGCTGGAAATGTCCAAGCGAAATAATGGCCAGGAGAAACCACAAACCGCA
CGACAGCAGGAACAGCGACAGCCACAGGAACAGCCACTGCAACAGGAGGA
ACTGCAGCATCAGCAGCAGGAACCCACTGTCACCGACAAAATCAACTTCT
TCAACAAGCTGACCAACACCTTTGAGTCGGGTTTCAGCAAGCTGATGCCC
CAAGCAAGCTCCACCAACAACCGCTTCATAGCCATGTTGCGCACCGCCCG
TCCTCAAAACGTTGCCACAACCACCGCCAACAGCAGCACCGCCAACAGTT
TCCTGGGCAGCGACCACAGTCTCAGTGGTTCCGTGACCGGACAAGTGCCA
CCACCCAAGCCCAAGAGACTGTCGGCCACCACCGCCCAGTTTGCCACTCC
CCATGTACCAGCCATGGGCGTGGGCAAGGGGGGCAGCCAGCGCAAGTGCT
CCCTGCGCCGCAAGCCTTCGATGGACAAGTCGAGGGCCACCATCTCCCGC
CAGAGTTCCAGTGCCTCAGTACGAACCCAGAACCACGCCATCATGGAGGA
CCTCAGTCTAGTGGTTCCCGTGAGATTGCGCATCGCGGAGTACGAGCAGC
GCATCTCGATGAGTGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATATCATATCATATCATATCATATCACAACTAGC
CTAGAGATCCTGGTCATGACTGTGCTGATTCTCACAATAAAAACGCCGCG
CAACCGACCGTTCTGACAAATCCGAATGAGTTCTGAAGTCATACCTG
UFO10247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnk-RA | 1028 | CG1480-RA | 18..932 | 3..917 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31193379..31194293 | 3..917 | 4560 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 20:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2549 | 344..588 | 227 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6893 | 314..423 | 187 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2515 | 330..471 | 172 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2616 | 314..527 | 157 | 57 | Plus |
UFO10247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:25 Download gff for
UFO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnk-RA | 154..1070 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:07 Download gff for
UFO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnk-RA | 16..932 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:57 Download gff for
UFO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnk-RA | 16..932 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:57 Download gff for
UFO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31193377..31194293 | 1..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:07 Download gff for
UFO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27019099..27020015 | 1..917 | 99 | | Plus |
