UFO10252.5prime Sequence
1058 bp (970 high quality bases) assembled on 2011-11-10
> UFO10252.5prime
CAGTCGACATGTCGGCCATCAGCAAGCAGAAGACCCTCAACACCATGTAC
AAATCGAAAGTCTCGCCTTCGCGTCGCCTGAAGAATCTGCTGAAGCCGCT
GCTCGGTCAATTCTTCAACATGAAGAAGGAGCAGCCCAAGAGGAGCTCCT
ACATCGCCTCCGAGGAGAAGGAGGCCGAGTTCGAGTGGCTCAGCAACGAT
ATGGACAACATGGCCAACGAGCATCTGGAGCATCGCCTCATCGAGGAAAT
CCGCCAGTGCGCCAAGGAAGATGCCGTCATCGTTTACAATGAGAACGGAT
CCGGGGAGCTGCACACCATCGACCAGGAGGATTACTATGTACCAGTGCAT
TTTGCCCGCACCAATGCCGGCACCTTCTTCTGGACATCGGTGCAACCCAA
AGCCTGCGAACCCTATGCCATCGAATGGAACTTCCTGGACCGTTGGGCTC
AAGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAACATATTTCTCAATAAACCCTTTAGGAATA
GCAGTTTTCACCGTACACGCCACATCCTGCGAATATATGTGTAGAACTGC
GAATCGTCCTGCAATCACTCGAGCGATGAAACGTTCAGTGGCCATGAACG
GGTAACAA
UFO10252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ocho-RB | 1193 | CG3396-RB | 457..903 | 9..455 | 2235 | 100 | Plus |
| Ocho-RC | 858 | CG3396-RC | 122..568 | 9..455 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14975304..14975750 | 9..455 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:01 has no hits.
UFO10252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:35 Download gff for
UFO10252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocho-RB | 451..907 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:11 Download gff for
UFO10252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocho-RC | 116..572 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:50 Download gff for
UFO10252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocho-RC | 116..572 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:50 Download gff for
UFO10252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14975298..14975750 | 1..455 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:11 Download gff for
UFO10252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14968398..14968850 | 1..455 | 99 | == | Plus |
