UFO10253.5prime Sequence
1056 bp (947 high quality bases) assembled on 2011-11-10
> UFO10253.5prime
CAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCATCCTGGGT
GACAGTGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCGGATAACCA
ATTCACCGAAAGACACCGGGTCACGGTGGGCATGGATAGAAGGGAGTGCA
GCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAGTCTGGGAC
ACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAATGTCGCAG
TGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCC
AAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTCCGGATAAG
GTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCA
GGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTCAATCTGCT
TTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACATATTTAGC
TCGTTGGCAATGGACATATATACATATCGTCGTGTACATTACAACCCGTT
CAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGAAGAGTCACTGGATG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGTATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCC
ATCACAAACGCATGATGAACCTGATCGCAGCGCATCAGCACTTGTCGCTT
GGTATATATTTTGCCCATGTTGAAACGGGCGAAGAAGTGTCATATTGCCA
CGTTAAATCAAACTGGTGAGTCCACAAGATGCTGAAAGAAACATTCCATT
AACGTA
UFO10253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9Db-RA | 871 | CG9807-RA | 68..658 | 9..599 | 2940 | 99.8 | Plus |
| Rab9Fa-RA | 871 | CG32671-RA | 68..658 | 9..599 | 2805 | 98.3 | Plus |
| Rab9D-RA | 897 | CG32678-RA | 94..684 | 9..599 | 2790 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10622568..10623158 | 599..9 | 2940 | 99.8 | Minus |
| X | 23542271 | X | 10950373..10950963 | 599..9 | 2805 | 98.3 | Minus |
| X | 23542271 | X | 10589182..10589772 | 9..599 | 2790 | 98.1 | Plus |
| X | 23542271 | X | 10661168..10661758 | 599..9 | 2775 | 98 | Minus |
| X | 23542271 | X | 10417496..10418080 | 9..599 | 1650 | 86.4 | Plus |
| X | 23542271 | X | 10951938..10952419 | 496..9 | 1115 | 82.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:16:10 has no hits.
UFO10253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:36 Download gff for
UFO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Db-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:15 Download gff for
UFO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Db-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:53 Download gff for
UFO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Db-RA | 68..661 | 9..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:53 Download gff for
UFO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10622565..10623158 | 9..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:15 Download gff for
UFO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10516598..10517191 | 9..603 | 99 | | Minus |
