UFO10258.5prime Sequence
1053 bp (935 high quality bases) assembled on 2011-11-10
> UFO10258.5prime
CAGTCGACATGGCCCACCAATTGAGCATCCTCTGCTGCGCACTTCTGGGA
GTGGCTGCTGCTAGCTACATCCCTCATGGTGGATATAGTCACGAACACGG
CGTGGGGTACAGCATCCAGACGCATCACGAGGCGCCCAAGCAGTGGCAGG
ATCACCACCAGGCTCACCACCAATGGGTGGATGTCCCAAAGGCCCATTCA
TGGGGCACAGTTCAGGATCATCACCACCAGCAGTGGGCTCCAGTCGCTGC
GCACGATAGCCACCACCAGTGGAGCCACCACGAGGAACCCAAACACCATC
CCAAATACGAATTCAATTACGGGGTGAAGGACACCAAGACCGGCGACATC
AAGCAGCAGTGGGAGACCCGCGATGGCGACAAGGTCAAGGGAGGCTACAC
CATGAAGGAGGCCGACGGACGCACCAGGATCGTTGAGTACACCGCCGACT
CCCACAACGGATTCCAGGCAACCGTGAAGCATGTGGGACACGCCAGTCAC
TTGGAGCACAGCCACTCATATGGCCAGCAATACGGACATGGGCATGGTCA
TGCCACCAGCTACGTGGATGTCAAACAGGACACCAGCAGCAAATGGGAGG
ACAAGAGCAACAAGTGGTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGCAGCATCACAAACGCATGATGACTGATCGCAGCG
CATCAGCACCTGTCGCTGCGTATATATTGCCATGTGAAACGGGGGCGAGA
GTTGTCATATTGCACGTTTATCAACTGTGAACTCACCAGATGCTGAACAA
ACC
UFO10258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Ba-RA | 781 | CG9283-RA | 58..669 | 9..620 | 3060 | 100 | Plus |
| Cpr76Bb-RA | 771 | CG9290-RA | 290..460 | 294..464 | 225 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19517664..19518275 | 620..9 | 3060 | 100 | Minus |
| 3L | 28110227 | 3L | 19519938..19520108 | 294..464 | 225 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:10 has no hits.
UFO10258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:31 Download gff for
UFO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 1..615 | 9..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:48 Download gff for
UFO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 50..669 | 1..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:31 Download gff for
UFO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 50..669 | 1..620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:31 Download gff for
UFO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19517664..19518283 | 1..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:48 Download gff for
UFO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19510764..19511383 | 1..620 | 99 | | Minus |
