UFO10259.5prime Sequence
1053 bp (950 high quality bases) assembled on 2011-11-10
> UFO10259.5prime
CAGTCGACATGATGGGAAAAGTTACCTATTTGTTGTGCCTGTGCCTGGCC
AGCGCCGTTTGGGCCATTGAATTGCAGGCGGAGCCGGACTACGGACCAGT
GGCCTACGAGTTCCAGTGGTCGGTGAACGATCCCCACACCGGCGACATCA
AGAGCCAAAAGGAGTCCCGCAAGGACGACAAGGTCGAGGGTGTCTACGAG
CTGATCGATTCCGATGGCTATCGCCGCATAGTGCAGTACAAGGCGGATGA
TCACAACGGTTTCGAGGCAATTGTCCAGCGTGAGCCCACGGACATCAAGA
TACCGTTGCCTGAGCCACCCAAGAAGCTCCTGGCCGCCAAGATCCTGACT
CCCGTGCTACCGGTGGCGCCACTCGTCCACTACGCCGCCCCCAAGGCCAT
TATCAAGCAGGAGCTGTCCGCCGGGAACTATGTCTCTGTATCCGGACCAA
CAGCACAGTACAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGA
AAACGGGGGCGAAGAGTTTTGATATTGTCCACGTTTAATCAAACTGGTGA
ACTCACCCAGGGATTGCTGAGACGAAAAACATATTTCTCATAAACCCTTA
GGAATAGCAAGTTTTCACGTACCGCACATCTGGCGAATATTTGTGTAGAA
CTGCGAATCGTCTGCTATCACTCCGAGCGATGAACGTCAGTTGCTCATGA
ACG
UFO10259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr30B-RA | 711 | CG3818-RA | 70..528 | 9..467 | 2295 | 100 | Plus |
| Cpr30F-RA | 827 | CG31876-RA | 234..362 | 135..263 | 240 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9543029..9543475 | 21..467 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 9932737..9932865 | 263..135 | 240 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:19 has no hits.
UFO10259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:32 Download gff for
UFO10259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 64..531 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:53 Download gff for
UFO10259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 64..531 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:34 Download gff for
UFO10259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 64..531 | 1..471 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:34 Download gff for
UFO10259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9543029..9543475 | 21..467 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:53 Download gff for
UFO10259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9543029..9543475 | 21..467 | 100 | == | Plus |
