UFO10266.5prime Sequence
1087 bp (975 high quality bases) assembled on 2011-11-10
> UFO10266.5prime
CAGTCGACATGGATGCTCCCACCATCAAGCTTGAGTCCTCGGATGGGATG
ATCTTTTCAACGGAAGTCCGAGCCGCCAAGCTCTCCGAAACCATCAAGAC
CATGTTGGAGGTCTCTGCCGTGGAGAACGACGAGAATGCCATTGTGCCGC
TGCCCAAGGTGAACGCGTTCATCCTATCCAAGATTCTGACCTGGATCTAT
CACCACAAGGACGATGATGCCCATGGAGCGGAGGGCGTGGAGTTGAGCCC
GCAAAGCCCACATGACATCTCAGCCTGGGACGCCAACTTTATTAACGTCG
ATCAACCCACCTTGTTCGAAATCATACTGGCCGCCAACTATCTGGAGATC
AAGGGCCTAGTGGATCTCTGTTGCAAGACGGTGGCCAATATGATTAGGGG
AAAGACTCCCGAGGAGATCCGCCACACGTTCAACATCCCGGACGAAATAC
CGAGCAGGACGGCCCAGTTGGGCGAAGACCTGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTT
TAATCAAACTGGTGAACTCACCCAGGGATTGCTGAGACGAAAACATATTC
TCATAACCCTTTAAGGAAATAGCCAGTTTTCACCGTACACGCCACATCTG
CGAATATATGTGTAGACTGCGAATCGTCTGCTATCACTCGAGCGATGAAA
CGTTTCAAGTGCTCATGGAACCGGTTACCAAGGGTGA
UFO10266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpC-RA | 629 | CG11941-RA | 67..540 | 9..482 | 2370 | 100 | Plus |
| SkpD-RA | 656 | CG12700-RA | 73..546 | 9..482 | 1890 | 93.2 | Plus |
| SkpE-RA | 713 | CG11942-RA | 82..515 | 9..442 | 970 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19816138..19816611 | 9..482 | 2370 | 100 | Plus |
| X | 23542271 | X | 19812801..19813274 | 9..482 | 1890 | 93.2 | Plus |
| X | 23542271 | X | 19823566..19823999 | 442..9 | 970 | 81.6 | Minus |
| X | 23542271 | X | 657416..657528 | 324..436 | 250 | 81.4 | Plus |
| X | 23542271 | X | 657113..657258 | 18..163 | 235 | 77.4 | Plus |
| 2R | 25286936 | 2R | 12139507..12139683 | 438..262 | 210 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:20 has no hits.
UFO10266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:41 Download gff for
UFO10266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpC-RA | 1..477 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:48 Download gff for
UFO10266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpC-RA | 1..477 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:19 Download gff for
UFO10266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpC-RA | 67..546 | 9..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:19 Download gff for
UFO10266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19816138..19816611 | 9..482 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:48 Download gff for
UFO10266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19710171..19710644 | 9..482 | 100 | == | Plus |
