UFO10267.5prime Sequence
1101 bp (958 high quality bases) assembled on 2011-11-10
> UFO10267.5prime
CAGTCGACATGAAATTGTTTTTCTTAGTTATTCTGGCCTGTATGCTAATC
GGAATTGCATGGGGAGAAAACTGCAATAAGCCGTGCGGAAAATGCATCTT
GCCCACCTGCAATTATGATGGCAAATGTTACTTTGAGGGAACTAGCGCTT
GTGCTCTGGAAAATGAAAAGTGCCGACGAAAGAAGAATAATCTTGACCAA
TTCGTAAAAACCGTGTCTGGGTTCTGTGAGATGGGCGTTAAAATGTGTAA
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGGT
TTGCTCATGGAAACGGTGTACAGGGTGAACACTATCCCATATCACAGCTC
ACCGTCTTTCATTGCATACGAAATTCGGATGAGCATTCATCAGCGGGCCA
GGATGGTGATAAGGCCGGGATAAACTTGGTGCTTATTTTTCTTACGGTCT
TTAAAGGCGTAATTCCAGCTGACGGTTGGTTAAAGGTACATGGACAACTG
TACTGAATGCCTAATGTTCTTTACGAGTGCCATGGATATCACGGGGGTAT
C
UFO10267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp35C-RB | 280 | CG42475-RB | 29..271 | 9..251 | 1215 | 100 | Plus |
| Sfp35C-RA | 368 | CG42475-RA | 29..271 | 9..251 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15201822..15201984 | 198..36 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 15201710..15201762 | 251..199 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:28 has no hits.
UFO10267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:42 Download gff for
UFO10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 24..275 | 4..257 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:52 Download gff for
UFO10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 24..275 | 4..257 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:22 Download gff for
UFO10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 24..275 | 4..257 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:22 Download gff for
UFO10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15201710..15201762 | 199..251 | 100 | <- | Minus |
| 2L | 15201822..15201983 | 37..198 | 100 | <- | Minus |
| 2L | 15202037..15202069 | 4..36 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:52 Download gff for
UFO10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15201710..15201762 | 199..251 | 100 | <- | Minus |
| arm_2L | 15201822..15201983 | 37..198 | 100 | <- | Minus |
| arm_2L | 15202037..15202069 | 4..36 | 91 | | Minus |
