UFO10268.5prime Sequence
1089 bp (963 high quality bases) assembled on 2011-11-10
> UFO10268.5prime
CAGTCGACATGAGAAAGGTCGTGTTAATTTGCTTACTAGCGAGATTTAGC
ATCGGATTTCCCCAGGCTCACATATACAAGCCACTTCTTTGTGAGGAAAC
CAATGCTAATATAACCAGATCTTCGCTTCTTGCACAATGTGTAAATCAGG
ACGAATGTTTTATAAACAGACCAGTAGGTCTATGCCCCAAACTTGAAGTT
TGCTGCGTTAAAAAACAAGATTTTAACATTGACGAGGTTGAATATATGGA
AGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTT
CAGTTTGCTCATGGAAAACGGTGTACAAGGTGAACACTATCCCAAATCAC
CAGCTCCACCGTCTTTCATTGCCATACGAATCCGGATGAGCATTCATCAG
CGGGCAGATGTGATACGCCGGAATAAACCTTGTGCTATTTTTCTTTACGT
CTTAAAGCCGTAATATCCAGCTGACGTTCTGTTATAGGTACATGGAGCAC
TGAACTGGATGCCTCAAATGTTCTTACGATGCATGAATA
UFO10268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp77F-RB | 1093 | CG42482-RB | 20..265 | 9..254 | 1230 | 100 | Plus |
| Sfp77F-RA | 319 | CG42482-RA | 20..265 | 9..254 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20897096..20897262 | 254..88 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 20897320..20897398 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:32 has no hits.
UFO10268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:42 Download gff for
UFO10268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp77F-RA | 1..252 | 9..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:53 Download gff for
UFO10268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp77F-RA | 20..271 | 9..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:24 Download gff for
UFO10268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp77F-RA | 20..271 | 9..262 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:24 Download gff for
UFO10268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20897096..20897262 | 88..254 | 100 | <- | Minus |
| 3L | 20897320..20897398 | 9..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:53 Download gff for
UFO10268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20890196..20890362 | 88..254 | 100 | <- | Minus |
| arm_3L | 20890420..20890498 | 9..87 | 100 | | Minus |
