UFO10269.5prime Sequence
1097 bp (1003 high quality bases) assembled on 2011-11-10
> UFO10269.5prime
CAGTCGACATGTTGGACCAACTTACACTGTGTTTGTTGCTAAATTTTCTG
TGCGCAAATGTTCTCGCTAACACTTCAGTATTTAATCCGTGTGTTTCGCA
AAATGAGTTATCCGAATATGAAGCCCACCAAGTGATGGAGAATTGGCCAG
TTCCGCCCATCGATCGGGCTTACAAATGCTTTCTAACATGCGTCCTCTTG
GATTTGGGTCTGATTGATGAACGGGGTAATGTGCAGATCGATAAGTACAT
GAAATCCGGAGTGGTGGACTGGCAATGGGTGGCAATAGAGTTGGTAACAT
GTCGCATAGAATTCAGCGACGAAAGGGATCTGTGCGAGCTATCATATGGA
ATCTTCAACTGCTTCAAGGATGTGAAGCTTGCGGCCGAGAAGTATGTTTC
AATTAGTAATGCAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATATAC
CCTTTAGGGAAATAGGCCAGGTTTTCACGTAACACGCACATCTTGCGATA
TATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCAGAGCGATGA
AAACGTTCAGTTTGCTCATCAACGGTGTACAGGGTGACCTATCCATATCC
ACAGCTCACCGCCTCATGCATACGAATCGATGACCATCATCAGGCGG
UFO10269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp57e-RA | 411 | CG30145-RA | 1..408 | 9..416 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20547819..20548169 | 416..66 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 20548234..20548291 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:41 has no hits.
UFO10269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:43 Download gff for
UFO10269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp57e-RA | 1..411 | 9..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:57 Download gff for
UFO10269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp57e-RA | 1..411 | 9..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:28 Download gff for
UFO10269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp57e-RA | 1..411 | 9..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:28 Download gff for
UFO10269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20547819..20548169 | 66..416 | 100 | <- | Minus |
| 2R | 20548235..20548294 | 2..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:57 Download gff for
UFO10269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16435324..16435674 | 66..416 | 100 | <- | Minus |
| arm_2R | 16435740..16435799 | 2..65 | 93 | | Minus |
