UFO10273.5prime Sequence
1072 bp (944 high quality bases) assembled on 2011-11-10
> UFO10273.5prime
CAGTCGACATGGGCGGACATCACGGCGAACCCTACACGGTGCCCCACGCA
TCGACCTACAAGGTGGAGAGTGTGCCCCAACTCGTGGAGGTGAAGGAGGC
TCTGGGCCGCCAGGGATTGAAGGATCCATGGCTGAGGAACGAAGTCTGGC
GCTATGAGCCCAAGGCCTTCGGCACCCACAGATCCCGCCTGAACACCTTC
CTTTTCCGCGGACTCGGCGTGGGATTCTGCGCTTTCCTGGCCACCGTCGC
CGTGGAGTACGCGCTGGGCATTGGCAAGGGTCAGGGCGGCCATGGACATG
GCCACGGTCACGAGGAACACGGAGATAAGGGCCACCATGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTGCGAATATATGTGTAGAACTGCGATCGCTGTAT
CATCGCGTGAACGTCGTGCATGAACGGTACAGTGACCTCATACCAGCACG
CTCATGCTCGATCGAACTCCAGGCAATGATAGCGTAACTGCTATTCTAGC
TAGCATCCTGAGCGTAGGATGACATGAGCAGTTAGCTGATCGTCGATTCT
ACTACGATCATACATACATACA
UFO10273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10320-RE | 405 | CG10320-RE | 40..369 | 9..338 | 1650 | 100 | Plus |
| CG10320-RD | 525 | CG10320-RD | 160..489 | 9..338 | 1650 | 100 | Plus |
| CG10320-RC | 520 | CG10320-RC | 155..484 | 9..338 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658538..21658741 | 135..338 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 21658353..21658481 | 9..137 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:17:57 has no hits.
UFO10273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:44 Download gff for
UFO10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10320-RA | 37..371 | 1..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:04 Download gff for
UFO10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10320-RC | 150..484 | 1..338 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:34 Download gff for
UFO10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10320-RC | 150..484 | 1..338 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:34 Download gff for
UFO10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658348..21658480 | 1..136 | 97 | -> | Plus |
| 2R | 21658540..21658741 | 137..338 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:04 Download gff for
UFO10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546045..17546246 | 137..338 | 100 | == | Plus |
| arm_2R | 17545853..17545985 | 1..136 | 97 | -> | Plus |
