UFO10276.5prime Sequence
1077 bp (963 high quality bases) assembled on 2011-11-10
> UFO10276.5prime
CAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCATCGCGCGG
AACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAGCATGTGCA
GCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTTCCGCTGCG
AGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCGCCGGCGAG
AAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAGACGGGCCA
AGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGAGGACTACG
CACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAGAGAAGCGG
GCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGTATCATCCA
ACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGAGGGACTAG
AGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCAACAATTCC
CACCCCAAGGCCAAGGCGGATAACTTTTGCTTCTACAACGAGCACTATGA
TAGTCTTAAAGGTCTAAGTTCTTGGGCATATCAAACGCTAGATGCACATC
GCAAGGACAAGCGAGATCCCTGCTACAGCTTAGAAGAACTAGAAAAGTCT
CTCACTTATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGA
GGGAAAGATGCACGGCTTTTTGCGCATGTACTGGGCCAAAAAGATTCTGG
AATGGACAGCGACACCGGAGCATGCGTTGGAGTACGCAATCCTGCTGAAC
GACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCTATGTGGGCTGCAT
GTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGAGCGGGCTATCTT
CGTAAGGTTAGGTACATGAACTATCAGGATGCCGTCGCAATTCGATGTAA
ATGCCTTTGTCATGCAATACGGCGGTAGGTGCACAGAGAAGCAGCTTCTG
AACATCGTTTGGCGCGCCGGCCAGATAGTGGTCATATCCTATCATATCAT
AATCATATCCACACTAGCCTAGAGAAT
UFO10276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18853-RA | 1157 | CG18853-RA | 133..1119 | 9..991 | 4775 | 99.3 | Plus |
CG12822-RB | 1468 | CG12822-RB | 134..641 | 9..516 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..641 | 9..516 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7829590..7829981 | 256..647 | 1960 | 100 | Plus |
2R | 25286936 | 2R | 7826932..7827267 | 646..977 | 1465 | 98.5 | Plus |
2R | 25286936 | 2R | 7830042..7830377 | 646..977 | 1465 | 98.5 | Plus |
2R | 25286936 | 2R | 7832700..7832960 | 256..516 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 68..257 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 68..257 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7826739..7826871 | 515..647 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 9..71 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 58..241 | 164 | 59.3 | Plus |
UFO10276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:46 Download gff for
UFO10276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18853-RA | 130..1124 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:13 Download gff for
UFO10276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18853-RA | 125..1119 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:42 Download gff for
UFO10276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18853-RA | 125..1119 | 1..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:42 Download gff for
UFO10276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7830044..7830377 | 648..977 | 98 | == | Plus |
2R | 7829186..7829255 | 1..70 | 95 | -> | Plus |
2R | 7829346..7829532 | 71..257 | 100 | -> | Plus |
2R | 7829592..7829981 | 258..647 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:13 Download gff for
UFO10276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3716691..3716760 | 1..70 | 95 | -> | Plus |
arm_2R | 3716851..3717037 | 71..257 | 100 | -> | Plus |
arm_2R | 3717097..3717486 | 258..647 | 100 | -> | Plus |
arm_2R | 3717549..3717882 | 648..977 | 98 | == | Plus |