UFO10279.5prime Sequence
1054 bp (958 high quality bases) assembled on 2011-11-10
> UFO10279.5prime
CAGTCGACATGATGAAGTTCATGTGCATCTGCCTCTGCGCCATCTCTGCC
GTTTCGGCCAACTCCTACGGACGTTCCCGTGGTGGATACGGTGGTGCCCC
AGTCGGTGGCTATGCCTACCAGGTGCAGCCTGCCCTGACCGTTAAGGCGA
TCGTTCCCTCATACGGTGGTGGATACGGCGGAAACCATGGAGGATATGGC
GGTGCCTACGAGTCGGTGCCTGTGCCCGTGTCCTCTGCCTACAGCGGTGC
CAATGTGGGATCTCAGTACTCCGGTTCCGGCTACGGCGGTGCCCCACCAG
TTGATGCCCAGGCCATTGCCCTCGCCAAGCTCGCCCTGGCCGCTCCCAGC
GCTGGAGCTCCTCTGGTCTGGAAGGAGGCTCCCCGCTACGCCCAGCCCGT
CTATCCCCCCACCAGCTACGTGAACCAGGAGTACGGACACAGCGAGAAGG
TGAAGGGAGGCTCCGCAGCCGCTGCTGCCAGCTCCGTGGCCGCCGGAAAG
AAGGGCTACAAGAGGCCCAGCTACGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTG
ATCGCCAGCGGCATCAGCACTTGTCGCTTGCGTATAATATTTGCCCATGG
TGAAACGGGGGCGAGAGTTGTCCATATTGCCACGTTTAAATCAACTGTGA
AACTCACCCAGGGATTGCTGAACGAAACATATCTCATAACCCTTTAGGAA
TACGCCAGTTCACCGTACGGCCCATCTGCAATTATGTGTAGAACTGCGAA
TCGT
UFO10279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp18-RA | 649 | CG6517-RA | 45..560 | 9..524 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8727023..8727524 | 23..524 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:18:31 has no hits.
UFO10279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:47 Download gff for
UFO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp18-RA | 35..564 | 1..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:19 Download gff for
UFO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp18-RA | 35..564 | 1..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:47 Download gff for
UFO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp18-RA | 35..564 | 1..529 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:47 Download gff for
UFO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8727024..8727524 | 24..524 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:19 Download gff for
UFO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8720124..8720624 | 24..524 | 100 | == | Plus |
