UFO10282.5prime Sequence
1107 bp (997 high quality bases) assembled on 2011-11-10
> UFO10282.5prime
CAGTCGACATGACGAGATCGACCTACATTTGGGCGCTGGCCGCCTGCCTG
ATCGCCTGTGCAAGCGCCAACTACGGCAGTTCCCAGGGCTATGGACCCGA
GTCCGGAAGCGGTGCCTCCGATGGCGGTGCTGATGCCGCTTCAGCGGCCG
CAGCAGCTGCCGGCGGTGCCGGTGGAGCTGGTGGCGAGTACGGTGGTGCT
AACGCCGGTGCTGGTGCTCTCGAATCCGGAGCCGATGCCGCCGGTGTGGC
ACAGGCTGGCCAGAGCAGCTACGGATCCGACCAGAACATTCCGTACAAGC
CGGTGAACACCAAGGGTAACACCCTGACCTCATCGATCACCTACCCGCAG
AACAAGGGCGAGATCCTCATCCATCGTCCCGCTCCCATCATTGTCAAGCG
TCCGCCCACCAAGGTGCTGGTGAACCATCCACCATTGGTGGTTAAGCCCG
CTCCCGTGGTGCTCCACAAGCCCCCAGCAATCGTTCTCCGCAAGGTCTAC
GTCAAGCACCACCCACGTCGCGTCAAGGTTGAGCCCGTGTTCGTCAATGT
GGTCAAGCCCCCAGCAGAGAAGTACTTTGTCAACGAGAACAAGCAGGGCT
ACGGACAGGGCTCGCAGTCCCACGGACACGGCCATGGACACGGTGGCCAT
GGACACGGACACAGCGGACACGGACACGGTGGACACGGTGCTGGACCCCA
TGGTCCTGGACCCCATGACGGTGGCCGTGCTCTGCCCGCCTACGCTTCGG
GAGCTGATTCCGCTGCCGCCAGCGCTGGCTATCAGCTGCTCCAGAGCGGC
AACCAGGGTCTGTCCGCTCTTGCCAACATCGCCGGCGAGCGTGAGGGTCC
CTATGGTCCCGCTCCAAGCCATCACCACTATAGCGCCGGTCCAGCCGGAC
ATGGCGGCTATGCTGCTCCCGCCTATGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTTCATATCATAATCATTAATCATAATC
ATATCAACACTAGGCCTAGGAAATCCTGATCATGACTAATGCTGGATCTC
CACCAAATAAAACGCTCGGGCGGCACGAGCGGTTCTGGAACCATCGAATG
GAGTTCT
UFO10282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-RB | 1249 | CG11213-RB | 78..995 | 9..926 | 4575 | 99.9 | Plus |
| Cp38-RA | 1112 | CG11213-RA | 78..995 | 9..926 | 4575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8482185..8483057 | 54..926 | 4350 | 99.9 | Plus |
| X | 23542271 | X | 8481914..8481959 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:17:49 has no hits.
UFO10282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:44 Download gff for
UFO10282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RB | 70..995 | 1..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:01 Download gff for
UFO10282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 70..995 | 1..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:32 Download gff for
UFO10282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 70..995 | 1..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:32 Download gff for
UFO10282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8481906..8481958 | 1..53 | 92 | -> | Plus |
| X | 8482185..8483057 | 54..926 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:01 Download gff for
UFO10282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8375939..8375991 | 1..53 | 92 | -> | Plus |
| arm_X | 8376218..8377090 | 54..926 | 99 | == | Plus |
