UFO10284.5prime Sequence
1085 bp (952 high quality bases) assembled on 2011-11-10
> UFO10284.5prime
CAGTCGACATGCGGACAGGGCGTATACTTGTTGCTTTGATTTTTCTAGGT
TTAATAATTCCCTTTCGGGCTGCAAAGTGCAGGGCAGCGCCCAAATCTGT
GCAAAATGTACACGTTTGTTGCTCAGCACCCCTGCCTAACTGGGGAGTTT
TCAACAGAGAGTGTCATAAATCGGCCATTCAAGCAAGTTGCCGTTTAGAT
TGCGATTTCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTGATCCAAGC
GAAAGTTCGACCCATGTTGGAGCGCGCCTTTTCCAACGAACCCACCATCG
ATGCATATGAGTCCAACTTTGCCAAATGTTCAACGGTGGTCAGGAGCAAA
TACCAGGAGCTATCTCCGCTGAGTCGTCAAAGCGACGCCTGTGACAGACA
CGCCCTCTTCTACAGCCTTTGTGCGTATGCTCGCTTGATTTTCACCTGTC
CGGACAAAATGTGGCAAAGAAATAACAGGATGTGCCAGGAGGCCAAGGCC
TATGCGAAAAAATGTCCTTGGCCAGCGCTAAAAATGTTTATGAGGAATAC
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCCCCAATGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAAGAAGTTG
TCCATATTGCCACGTTTAATCAAACCTGGTGAAACTCCACCCAGGATGCT
GAACCGAAAACATATTTCTCAATAACCCTTTAAGATAGCCAGTTTCACCG
TACCGCCCATCTGCATATATGTGTAGAACTGCGAT
UFO10284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50a-RA | 671 | CG30067-RA | 93..635 | 9..551 | 2715 | 100 | Plus |
| Obp50a-RB | 728 | CG30067-RB | 330..692 | 189..551 | 1815 | 100 | Plus |
| Obp50a-RB | 728 | CG30067-RB | 93..272 | 9..188 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14370367..14370729 | 551..189 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 14370929..14371024 | 104..9 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 14370787..14370875 | 188..100 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:08 has no hits.
UFO10284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:03 Download gff for
UFO10284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..638 | 9..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:49 Download gff for
UFO10284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..638 | 9..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:02 Download gff for
UFO10284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..638 | 9..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:02 Download gff for
UFO10284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14370363..14370729 | 189..555 | 99 | <- | Minus |
| 2R | 14370787..14370870 | 105..188 | 100 | <- | Minus |
| 2R | 14370929..14371024 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:49 Download gff for
UFO10284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10257868..10258234 | 189..555 | 99 | <- | Minus |
| arm_2R | 10258292..10258375 | 105..188 | 100 | <- | Minus |
| arm_2R | 10258434..10258529 | 9..104 | 100 | | Minus |
