UFO10287.5prime Sequence
1066 bp (961 high quality bases) assembled on 2011-11-10
> UFO10287.5prime
CAGTCGACATGCCGCAGGCCAATCTTACGTTAAGTCCCCATGATCAGCAG
GTGCTCGATTCCATTTTCAATCCCCTCGAGCTTAGCAGCCTACAGACAAA
TAACTTAATTCCCGCTGAATCCGACCTGAAGGATGAGGAGCCGGATACCC
AGGCTATCAAAGCTTCCAGGGAACTGGAGCTAAAAGCCATCGCCTTATCC
GAAAGCGGGGAGCTTGATGGAGCACTGGAACTATTTCAACAATCATTAAA
TCTAGCCCAGAGGGCTTCCGTGCTTAATAATCGGGCACAAACTTTACGCC
TAGCCAAACGTGATGAGGAGGCCCTCGATGACCTAAACAAAGCCCTAGAA
CTGGCCAATGATCAGCAGACCCGCACCAAGTGCCATGCCCATTGTCAGCG
AGGTGTCCTTTATCGTAAACTGGATAACTTGGAGGCGGCTCGTGCCGATT
TCGAGGCAGCAGCCCAGTTGGGCAGTAAATTCGCCAGAGAACAGTTGGTG
GAAATCAATCCCTATGCAGCTCTCTGCAATCAAATGCTCCGTCAGGCATT
CGATCAACTCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGAAGCCATCACAAACGGCATGATGAACTGATCGCCAGCGGCA
TCAGCACTGTCGCCTTGCGTATATATTTGCCCATGTGAACGGGGCGAGAG
TGTCATATGCCACGTTTAATCAAAACTGTGAAACTCACCAGGATGCTGAA
GAAAACTATTCTCATAACCTTTAGGAAATGCAGGTTCACCGTAACCGCAA
TCTGGCAATTATGGTA
UFO10287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14105-RA | 666 | CG14105-RA | 37..592 | 8..563 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13426327..13426637 | 318..8 | 1555 | 100 | Minus |
| 3L | 28110227 | 3L | 13426089..13426265 | 494..318 | 885 | 100 | Minus |
| 3L | 28110227 | 3L | 13425965..13426036 | 563..492 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:34 has no hits.
UFO10287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:51 Download gff for
UFO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14105-RA | 29..601 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:45 Download gff for
UFO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14105-RA | 29..601 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:06 Download gff for
UFO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14105-RA | 29..601 | 1..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:06 Download gff for
UFO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13425956..13426033 | 495..571 | 96 | <- | Minus |
| 3L | 13426089..13426264 | 319..494 | 100 | <- | Minus |
| 3L | 13426327..13426642 | 1..318 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:45 Download gff for
UFO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13419056..13419133 | 495..571 | 96 | <- | Minus |
| arm_3L | 13419189..13419364 | 319..494 | 100 | <- | Minus |
| arm_3L | 13419427..13419742 | 1..318 | 99 | | Minus |
