UFO10288.5prime Sequence
1051 bp (966 high quality bases) assembled on 2011-11-10
> UFO10288.5prime
CAGTCGACATGATCTCACGACGCGACAAATTGCTGCAGCAGCCGTGGGAG
CAACTGCGGTACGCCCAGCACCGCGAGAAGGTCATGTCCGCCCGCCCAGC
CATTGACACCCACTCGCCGCGCGCCCACGAACACGTGCAGCGCAAGTGGA
AGAAGCAGCAAGTGGAGCGGGAGCGCCAGCAGCAGATCGAGCGGGAGAAC
CTAAGACTCCTCCAGAAACTGGGCGACATCATGCGCACCAAGCGCATCAA
CAATCTCTGGCTGGAGCCGCGGCCCAATTTTCTTAACCGCGAGAAGCTTT
TTGCCACCCGTCCGTACTCCAGCCTCCCGGAAGTGGTCACCATTTACGGA
AAACAACCGCCGGGACCACTTATCTATGGCATGCTGCCCAAACCGGCGGT
TGTGGGTCGGTGTCCCACCTGCAGCGGCAATCCGGAGCGCACCGAGGTGG
CCATACCCGAGCAGCGAACTCCTTGGGCGCCCGAGAGAAAGTCCTGGAAC
CGGAAGACCCAGGAGCAAGTAAAGCCGCATCGATGCTACCACTGCGGATC
TGTAAAGACCAGCGAACGCAAGTACTTCGAGGAATTCTCCTACTCTTACT
CCTACGACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGGCATTCTGC
CGACATGCAGCCATCACAAACGGCATGATGACCTGAATCGCCAGCGCATC
AGCACCTGTCGCTTGCGTATATATTTGGCCATGGTGAAACGGGGGCGAGA
GTTGTAGATATGCCACGTTATCAAACTGTGACTCACAGATGCTGAACGAA
A
UFO10288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14551-RB | 660 | CG14551-RB | 11..613 | 9..611 | 3015 | 100 | Plus |
| CG14551-RA | 1432 | CG14551-RA | 783..1385 | 9..611 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26061315..26061648 | 611..278 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 26061961..26062229 | 277..9 | 1345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..712 | 194..154 | 115 | 75.6 | Minus |
UFO10288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:52 Download gff for
UFO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14551-RA | 775..1385 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:49 Download gff for
UFO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14551-RA | 775..1385 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:09 Download gff for
UFO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14551-RA | 775..1385 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:09 Download gff for
UFO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26061315..26061648 | 278..611 | 100 | <- | Minus |
| 3R | 26061961..26062237 | 1..277 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:49 Download gff for
UFO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21887683..21887959 | 1..277 | 98 | | Minus |
| arm_3R | 21887037..21887370 | 278..611 | 100 | <- | Minus |
