UFO10293.5prime Sequence
1130 bp (965 high quality bases) assembled on 2011-11-10
> UFO10293.5prime
CAGTCGACATGAAACGTCTTCTATTTCTCTTTCTGCTTGCTGGTATTTTA
ATAAACAATCATGCCCTGCAGCACAACGAGACCATTGACTTGAAAAAGTT
GGCCAAAATAGTGCTGCCTCCGGCTTATCAAACCCGTGTTATTGGTGGTC
GGGTGACCACCAACGCGAAATTGGGCGGATACCTGGTGGCAATGCGGTAC
TTCAATAATTTCATCTGCGGCGGTACTTTAATCCATGAGCTCATTGTCCT
CACGGCGGCGCACTGTTTTGAGGACCGAGCAGAAAAGGAAGCCTGGAGCG
TGGATGGTGGCATCTCCAGACTCAGCGAAAAAGGCATTCGTCGTCAAGTT
AAGCGCTTCATTAAGTCGGCCCAGTTTAAAATGGTCACCATGAACATGGA
CGTGGCTGTGGTGCTACTGAATCGACCGATGGTTGGAAAAAACATCGGAA
CTCTATCCTTGTGCAGTACGGCCTTGACTCCGGGACAGACAATGGACGTA
TCCGGCTGGGGAATGACAAATCCGGATGACGAGGGTCCGGGGCATATGCT
CCGCACGGTATCAGTACCTGTGATTGAAAAAAGAATATGCCGCGAAGCCT
ATCGGGAATCAGTCTCCATATCGGATAGCATGTTTTGTGCCTCAGTTTTG
GGAAAAAAGGATGCTTGCACCTACGACTCAGGAGGTCCCTTGGTTTACGA
AAAACAAGTCTGCGGCATTGTGTCCTTTGGGATCGGATGTGCGAGCAGGC
GTTATCCCGGTGTCTATACGGATGTTCATTACGTAAAGCCATTTATTGTA
AAAGGCATCAAAGCTTTGCTCTCCCGTTCCAGGGGCAAGCTTTCTAAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAAGATCTTGTCATGATCTGTG
CCTTGGAATCCCCACCAAATAAAAAAACGCCCGGCCGCAACCGAGCGGTT
CTTGAACAAATCAAGATGGGAGTTCCTAGGTCATAACTGGATCTATCAAC
AGGATCCAAGCGGCTCGATTATCAAATTACGCCCCGCCCTGCCATCATCG
AAGATACTGGTGGTAATCATAAGCATTTTC
UFO10293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-RA | 883 | CG10586-RA | 17..846 | 4..833 | 4135 | 99.9 | Plus |
| CG11037-RA | 913 | CG11037-RA | 705..868 | 657..820 | 340 | 81.2 | Plus |
| CG10588-RB | 3727 | CG10588-RB | 3510..3673 | 820..657 | 340 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20956126..20956734 | 612..4 | 3030 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20955792..20956015 | 833..610 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 20960443..20960606 | 820..657 | 340 | 80.5 | Minus |
| 3L | 28110227 | 3L | 20961623..20961765 | 772..630 | 280 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-27 20:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 1844..1873 | 44..15 | 114 | 86.7 | Minus |
| G4 | 3856 | G4 G4_DM 3856bp | 2264..2311 | 53..6 | 113 | 75.5 | Minus |
UFO10293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:53 Download gff for
UFO10293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10586-RA | 16..851 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:57 Download gff for
UFO10293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 16..851 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:14 Download gff for
UFO10293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 16..851 | 1..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:14 Download gff for
UFO10293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20955787..20956012 | 613..841 | 98 | <- | Minus |
| 3L | 20956126..20956735 | 1..612 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:57 Download gff for
UFO10293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20948887..20949112 | 613..841 | 98 | <- | Minus |
| arm_3L | 20949226..20949835 | 1..612 | 99 | | Minus |
