UFO10295.5prime Sequence
1043 bp (935 high quality bases) assembled on 2011-11-10
> UFO10295.5prime
CAGTCGAGATGAAGGCCTTCATCGTTCTGGTTGCCCTGGCTATGGCCGCT
CCTGCTCTTGGTCGCACCTTGGACCGTTGCTCCCTGGCCCGCGAGATGTC
CAACCTGGGCGTTCCTCGTGACCAATTGGCTCGTTGGGCCTGTATTGCCG
AGCACGAGTCCTCCTACCGCACCGGAGTGGTGGGTCCTGAGAACTACAAC
GGCTCCAACGACTACGGAATCTTCCAGATCAACAACTACTACTGGTGCGC
TCCTCCCAGCGGTCGCTTCTCCTACAACGAGTGCGGATTGAGCTGCAACG
CCCTCTTGACCGACGACATCACCCACTCCGTTCGTTGCGCCCAGAAGGTC
CTTAGCCAGCAGGGATGGTCCGCCTGGTCCACCTGGCACTACTGCAGCGG
ATGGTTGCCGTCCATCGATGGCTGCTTCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGTCCACGTTTAA
ACCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TTCTCATAACCCTTTAGGAATACGCCAGGTTTTCACGGTACACGCCACAT
CTGCGATATATGTTGTAGAAAACTGCCGGAATCGTCGTGGTTTCACCTCG
AGCGAATGAACGTTCAGTTGCTCATGGAACGTGGTACATGGTG
UFO10295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LysE-RA | 580 | CG1180-RA | 126..545 | 9..428 | 2100 | 100 | Plus |
| LysB-RB | 611 | CG1179-RB | 24..443 | 9..428 | 1875 | 96.4 | Plus |
| LysB-RA | 486 | CG1179-RA | 24..443 | 9..428 | 1875 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1212952..1213371 | 9..428 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 1207394..1207813 | 9..428 | 1875 | 96.4 | Plus |
| 3L | 28110227 | 3L | 1210758..1211177 | 428..9 | 1800 | 95.2 | Minus |
| 3L | 28110227 | 3L | 1227772..1228191 | 9..428 | 950 | 82.7 | Plus |
| 3L | 28110227 | 3L | 1210485..1210726 | 9..250 | 850 | 90.1 | Plus |
| 3L | 28110227 | 3L | 1218286..1218607 | 402..81 | 665 | 80.4 | Minus |
| 3L | 28110227 | 3L | 1194874..1195241 | 427..60 | 595 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:01 has no hits.
UFO10295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:49 Download gff for
UFO10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysE-RA | 117..548 | 1..432 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:30 Download gff for
UFO10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysE-RA | 117..548 | 1..432 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:55 Download gff for
UFO10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysE-RA | 117..548 | 1..432 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:55 Download gff for
UFO10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1212943..1213371 | 1..428 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:30 Download gff for
UFO10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1212943..1213371 | 1..428 | 99 | == | Plus |
