UFO10302.5prime Sequence
782 bp (780 high quality bases) assembled on 2011-12-08
> UFO10302.5prime
CAGTCGACATGAAGCTCAACGTTTCCTATCCCGCGACGGGATGCCAAAAG
CTATTCGAAGTGGTCGACGAGCACAAGCTGCGCGTCTTCTACGAGAAGCG
TATGGGACAGGTTGTGGAGGCCGATATCCTCGGTGACGAGTGGAAGGGCT
ACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAGGGATTCCCCATGAAG
CAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCTCCTGAAGAAGGGACA
CTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTAAGCGCAAGTCTGTGC
GTGGATGCATCGTGGACGCCAACATGTCTGTGCTGGCTCTGGTCGTCTTG
AAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGACACCACCATCCCACG
TCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCAAGCTCTACAACTTGA
GCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGTCGCCCTTTGCCCGCC
AAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAAAATTCAGCGCCTGAT
CACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCATTGCGCTGAAGAAGA
AGCGCCAGATCGCTTCCAAGGAGCTTCCGCCGACTACGCCAAGCTGTTGG
TGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGAGGAGCCAAGCGCCGCC
GTTCTGCCTCCATTCGCGAGTCAAGAGCTCTGTCTCCAGCGACCAGAAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
UFO10302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS6-RB | 960 | CG10944-RB | 84..827 | 9..749 | 3630 | 99.5 | Plus |
| RpS6-RA | 1195 | CG10944-RA | 323..1062 | 13..749 | 3610 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7899757..7900290 | 749..219 | 2505 | 99.3 | Minus |
| X | 23542271 | X | 7900802..7901009 | 220..13 | 1040 | 100 | Minus |
| X | 23542271 | X | 7897401..7897490 | 683..595 | 220 | 85.6 | Minus |
| X | 23542271 | X | 7898591..7898680 | 683..595 | 220 | 85.6 | Minus |
| X | 23542271 | X | 7897603..7897725 | 356..234 | 195 | 77.2 | Minus |
| X | 23542271 | X | 7898793..7898915 | 356..234 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:41 has no hits.
UFO10302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:17 Download gff for
UFO10302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 74..828 | 1..752 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:49 Download gff for
UFO10302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 76..830 | 1..752 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:14 Download gff for
UFO10302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 76..830 | 1..752 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:14 Download gff for
UFO10302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7899754..7900289 | 220..752 | 99 | <- | Minus |
| X | 7900803..7901009 | 13..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:49 Download gff for
UFO10302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7793787..7794322 | 220..752 | 99 | <- | Minus |
| arm_X | 7794836..7795042 | 13..219 | 100 | | Minus |
