UFO10303.5prime Sequence
1089 bp (956 high quality bases) assembled on 2011-12-08
> UFO10303.5prime
CAGTCGACATGGACGGTCACAGCTGGCTTCACTTCAGCAACGGAGCAATC
CCCCAGGCAGCCGTTGTGGCTGGTCACGATTCCGATGGCGACACCATCTT
CATTGGCCGCGCCTTCTACTGCAACGACATGCTGCCGGCCAAGATTATCC
CCAACAAGGGCAAGGCCTACGTGGCGTATGCCAACCAGGAGGTGGAGCTG
GAGAACTACGAGGTACTCAGCGGCTTCAACTACGAGTGGCTGCCGGCCGA
GAACGGAGAGGTGCCTCCCGGCGCCGTCAAGGTCGGCCAGAATGTCGACG
GAGAGACCTTGTACGCCGGAAGGGGCTACCATGCCGGCAGTTTGACCGTG
GGCAAGGTGCATCCGTCCCACGGCTGCCTGTACATTCCCTACGATTCCGA
GGAGGTTAAGATATTCGCCTACGAGGTTCTGTCCCGTCGCTTGGAGGCGA
GAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGTCACGTTTAAATCAAACTGGTGAAACTCACCCAGG
GATTGCCTGAGACGAAAAACATTATTCTCAATAAACCTTTTAGGAAATAG
CAGGTTTCACCGTACACGCCACATCTGCGATAATATGTGTAGAACTGCGG
AATCGTCGTGTATTCACCTCCAGAGCGATGAAACGTTTCAGTGCTCATGA
AACCGTGTTACCAGGTGACCCTATCAATATCCACAGCTC
UFO10303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31086-RB | 906 | CG31086-RB | 405..853 | 4..452 | 2230 | 99.8 | Plus |
| CG31086-RA | 527 | CG31086-RA | 26..474 | 4..452 | 2230 | 99.8 | Plus |
| CG31323-RA | 3489 | CG31323-RA | 1919..2356 | 15..452 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26185737..26186174 | 15..452 | 2190 | 100 | Plus |
| X | 23542271 | X | 13562010..13562382 | 60..432 | 1055 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:46 has no hits.
UFO10303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:17 Download gff for
UFO10303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31086-RA | 15..466 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:51 Download gff for
UFO10303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31086-RA | 23..474 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:16 Download gff for
UFO10303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31086-RA | 23..474 | 1..452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:16 Download gff for
UFO10303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26185729..26186174 | 6..452 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:51 Download gff for
UFO10303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22011451..22011896 | 6..452 | 99 | == | Plus |
