UFO10305.5prime Sequence
1089 bp (974 high quality bases) assembled on 2011-12-08
> UFO10305.5prime
CAGTCGACATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCAACATCTGC
AGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAGAAGGCGAA
TGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTGGCACGTGG
GCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGCACGGCCTC
AAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTCTCGGAATT
CGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCTAAGGCGTC
TGGCGCCCAAGGGCTCCAAGGCGGAGCTCCTCATGCTGGGCGATTTCGGA
CTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGAGCGTGGAGC
CGAGGGCTTTGAGACCGCCTATCAGCAGTGCGTGGTTGCCTGTGCCGCCT
TCATGAAAGAGCGCCTCCAGAAAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAACCGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAT
AAACCTTAAGGAATAGGCCAGGTTTCACGTACACGCCACATCTGCGAATA
AATGGTGTAGAACTGCCGAATTCGTCTGCTATCACTCAGAGCGATGAAAC
GTTTCAGCTGCTCATGAAACCGGTTAACCAAGTGACTAT
UFO10305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-RB | 588 | CG33748-RB | 71..535 | 9..473 | 2325 | 100 | Plus |
| primo-1-RA | 1336 | CG33748-RA | 819..1283 | 9..473 | 2325 | 100 | Plus |
| primo-2-RC | 1336 | CG33747-RC | 819..1283 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13710308..13710659 | 390..39 | 1760 | 100 | Minus |
| 3R | 32079331 | 3R | 13710070..13710153 | 473..390 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 4572..4617 | 918..963 | 113 | 71.7 | Plus |
UFO10305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:19 Download gff for
UFO10305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:03 Download gff for
UFO10305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:25 Download gff for
UFO10305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-2-RC | 819..1293 | 9..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:25 Download gff for
UFO10305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13710070..13710153 | 390..473 | 100 | <- | Minus |
| 3R | 13710309..13710658 | 40..389 | 100 | <- | Minus |
| 3R | 13710723..13710753 | 9..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:03 Download gff for
UFO10305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9535792..9535875 | 390..473 | 100 | <- | Minus |
| arm_3R | 9536031..9536380 | 40..389 | 100 | <- | Minus |
| arm_3R | 9536445..9536475 | 9..39 | 100 | | Minus |
