UFO10306.5prime Sequence
1098 bp (969 high quality bases) assembled on 2011-12-08
> UFO10306.5prime
CAGTCGACATGTTCATCGAAAGCTTCCTGCTGCTCCTGGCGCTAGACTTC
CTGTCCGCAGGACAAGTAAACCGATGGGAACAACGTATCATCGGCGGAGA
ACCCATTGGAATCGAACAGGTTCCCTGGCAGGTGTCTTTGCAATATTTTG
GCGACCATGTGTGCGGCGGCTCCATTTACAGCGAAAATATCATCGTTACT
GCGGCCCATTGTTTTTTTGATGAGGAAGGCAATCGGCTAGATGACCAAGG
ATATCAAGTTCGCGCAGGATCCGCCCTAACAGATTCCAATGGAACTCTTG
TCGATGTGGCCGCTTTAATAATCCACGAAGAATATGCGTTTGATCTTAAT
ATAAACGACATCGCAATCGTGAGGTTAAGTACGCCACTTGAGTTCACAAG
CAAAGTTCAACCCATTCCTTTGGCTAAGACGAATCCTTATCCTAGATCGA
TTGCCCTCGTCTCTGGCTGGGGAGTGTCTTATATCTTAAACGATTCGACG
AATTTATACCCAACACATCTTCAAGGATTAGCCCTGCACATCAAAAGCAT
TTTCTCCTGCAGACTCTTTGATCCTTCACTACTATGCGCAGGCACTTATG
GAAGAACCGCTTGTCATGGCGACTCTGGAGGACCATTGGTGGTCAACAAA
CAACTTGTGGGTGTTGTCTCCTGGGGTCGAAAAGGTTGCGTATCCAGTGC
ATTCTTCGTCAGTGTTCCTTATTTCCGTGAATGGATCTTAAATGCTATTG
CCTCAATTCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCC
CGGGCGGCAACCGAGCGTTCTGACAATTCAGATGGAGTTCTGAGTCATTA
CTGATTTTATCACAGGAGTCAGCCGAGCTCGAATATTCAATTACGCCCCG
CCTGCACTCATCGCAGTACTGTTTGTATTCATTTAGCATTCTGCCGAACT
TGAGCATTCAAACTCATGGATTGAACTGATCGCCAGCGATCAGATCCT
UFO10306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17234-RA | 808 | CG17234-RA | 29..787 | 3..761 | 3780 | 99.9 | Plus |
| Send2-RA | 774 | CG18125-RA | 35..720 | 9..748 | 615 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2253073..2253831 | 3..761 | 3780 | 99.9 | Plus |
| 2L | 23513712 | 2L | 14346452..14346654 | 211..9 | 445 | 81.3 | Minus |
| 2L | 23513712 | 2L | 14346229..14346349 | 473..353 | 365 | 86.8 | Minus |
| 2L | 23513712 | 2L | 14345969..14346134 | 748..583 | 305 | 78.9 | Minus |
| 2L | 23513712 | 2L | 14346369..14346442 | 318..245 | 205 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:14 has no hits.
UFO10306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:19 Download gff for
UFO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 1..756 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:08 Download gff for
UFO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 26..790 | 1..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:28 Download gff for
UFO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 26..790 | 1..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:28 Download gff for
UFO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2253070..2253834 | 1..764 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:08 Download gff for
UFO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2253070..2253834 | 1..764 | 99 | == | Plus |
