UFO10307.5prime Sequence
1113 bp (942 high quality bases) assembled on 2011-12-08
> UFO10307.5prime
CAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAACCTACTCC
TCGAGGCCGGTGACAACTTCCTACGCAGTTACGTACCCCTCGGTCGAGAA
AGTAACTCGTGTGTACAAGTCGAGTTACCCCATCTACTCGAGCTACTCGG
TGCCACGCCGCGTCTACGGCGCAACCCGGGTGGTGACCTCGCCCATCCGC
GTGGTAACCTCGCCTGCCCGCGTGGTGTCCCGCGTCATACACTCACCATC
GCCTGTTCGCGTTGTCCGCACGACGACCCGAGTGATTTCATCGCCGGAGC
GCACCACCTACTCCTACACCACGCCATCGACCTACTACAGCCCCTCCTAC
TTGCCATCGACCTACACTTCGACCTACATCCCGACATCGTACACCACGTA
CACGCCGTCCTACGCCTACAGCCCGACCACGGTCACCCGGGTGTATGCCC
CACGCAGTTCGCTGTCGCCGCTGAGGATCACCCCCTCGCCGGTGAGGGTC
ATCACCAGCCCGGTTCGCTCTGTGCCCTCCTATCTGAAGAGGCTGCCGCC
TGGTTACGGTGCCCGCGCCCTGACCAATTACCTCAATACCGAACCCTTTA
CCACCTTCTCCGAGGAAACAAGCCGGATTCGCAACCGCGCGCAATCTCTG
ATTCGTGACTTGCACACTCTCGTGGTGCGCCGTGCACGTAGCTGCACTCC
CTTTCCCGTCACTGGTTACACCTATGAGCCGGCCTCGCAACTGGCCCTAG
ATGCCTATGTGGCCCGTGTCACAAATCCTGTCCGTCATATTGCCAAGGAA
GTTCACAATATTTCGCACTACCCCAGGCCAGCAGTGAAATATGTTGGTAA
AAGTCATCTTGCATCAGTAAAGGATTTGCGGTGACAAGCCTATTATGTTA
GAAAGTCCCGTTGTACGATACGGAACAAAGTTTCGAACTTGATATTAACC
TCTTGTCCTGTTACCCTTAGACACCCGGACTTTGGAAAGAATTGATAAGA
AATCCCAAGATTCCTGTGAAGAAGTGAAAGCTTGTTGAAGTTGAGGCCGC
AAGCCTTTCTAGAACATCGTTTGGGCGCGCGGCCCCAGGGTAGTGTTCAT
AATCCTAATCCTA
UFO10307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-RI | 2109 | CG45076-RI | 122..1152 | 7..1048 | 4770 | 98.1 | Plus |
| CG45076-RE | 1215 | CG45076-RE | 122..1152 | 7..1048 | 4770 | 98.1 | Plus |
| CG45076-RH | 2199 | CG45076-RH | 122..961 | 7..846 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10772113..10772604 | 602..111 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 10771333..10771468 | 850..715 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 10771860..10771972 | 715..603 | 550 | 99.1 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 83..7 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:21 has no hits.
UFO10307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:20 Download gff for
UFO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 112..1149 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:13 Download gff for
UFO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 118..1155 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:31 Download gff for
UFO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45076-RE | 118..1155 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:31 Download gff for
UFO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10771038..10771205 | 847..1024 | 91 | <- | Minus |
| 3R | 10771337..10771467 | 716..846 | 100 | <- | Minus |
| 3R | 10771860..10771972 | 603..715 | 99 | <- | Minus |
| 3R | 10772113..10772604 | 111..602 | 100 | <- | Minus |
| 3R | 10773135..10773161 | 84..110 | 100 | <- | Minus |
| 3R | 10777177..10777257 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:13 Download gff for
UFO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6597582..6597694 | 603..715 | 99 | <- | Minus |
| arm_3R | 6596760..6596927 | 847..1024 | 91 | <- | Minus |
| arm_3R | 6597059..6597189 | 716..846 | 100 | <- | Minus |
| arm_3R | 6597835..6598326 | 111..602 | 100 | <- | Minus |
| arm_3R | 6598857..6598883 | 84..110 | 100 | <- | Minus |
| arm_3R | 6602899..6602979 | 1..83 | 96 | | Minus |
