UFO10313.5prime Sequence
1089 bp (956 high quality bases) assembled on 2011-12-08
> UFO10313.5prime
CAGTCGACATGAATGAATCCACACCAAGTAACTGCAGCACACGAAACACA
CAAATACCAATTCGAGCGGTTCTCAGACAGACCAGGGAAAGTTTAACTGA
GATCTTTACCAAGTATCGCCAAAAAGTGGGCAATGGAGCTCTCCTGGCGG
TTCAAAGGGTCAAAACTTCTCAACAATTAAGTCTTATAAAGCCAAGCCTT
CGTTGTGTAACCAAACGACAGAGTTTCTTTAAACGATATGGATGCGAAGA
GGTGGCCACTGTGTGCCTTTTGGTGGTCATTTTGTTGATGCTCTTGTTTG
GACTTTACCTGGCCAGGAACTACAATCACGCCTATATCTATGGCTCTGGT
GGATGCCTTTCGACGTTTTTGTGGACATACGATGAATGCCAAATAATTAC
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCGGG
GATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTAGGGAAATAGGC
AGGTTTTCACCGTACACGCCACATCTGCGAATATATGTGTAGAACTGCCG
GAATCGTCGTGTATCTGTCCAAGCGATGAAACGTTTCAGTTTGCTCATGG
AACCGGTGTACAAGGTGAACCTATCCAATCACCAGCTCACGTCTTCATGC
ATACGATCGGATGACCATCATCAGGCGGCAGAATGTCAT
UFO10313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34245-RD | 560 | CG34245-RD | 91..483 | 9..401 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14894112..14894326 | 223..9 | 1075 | 100 | Minus |
| 3L | 28110227 | 3L | 14893811..14893990 | 401..222 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:41 has no hits.
UFO10313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:22 Download gff for
UFO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34245-RD | 84..488 | 1..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:23 Download gff for
UFO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34245-RD | 84..488 | 1..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:40 Download gff for
UFO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34245-RD | 84..488 | 1..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:40 Download gff for
UFO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14893811..14893988 | 224..401 | 100 | <- | Minus |
| 3L | 14894112..14894331 | 1..223 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:23 Download gff for
UFO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14886911..14887088 | 224..401 | 100 | <- | Minus |
| arm_3L | 14887212..14887431 | 1..223 | 98 | | Minus |
